Pre_GI: BLASTP Hits

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Query: NC_003305:1:16360 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 16360, End: 17928, Length: 1569

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010001:615427:6154276154276171031677Clostridium phytofermentans ISDg, complete genomeextracellular solute-binding protein family 14e-91335
NC_015690:4361000:4447186444718644488201635Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-45182
NC_016935:4117485:4213319421331942149531635Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-44181
NC_013406:5066769:5112003511200351135981596Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein3e-42173
NC_015690:3883243:3902653390265339042781626Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-40167
NC_016935:1306472:1327748132774813293731626Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein3e-40166
NC_013406:5066769:5070236507023650718521617Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-39164
NC_004193:3325612:3341057334105733426911635Oceanobacillus iheyensis HTE831, complete genomehypothetical protein1e-36154
NC_014652:163347:1770881770881787071620Caldicellulosiruptor hydrothermalis 108 chromosome, completeextracellular solute-binding protein family 13e-35150
NC_013406:3583474:3586825358682535884531629Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein5e-32139
NC_014657:1775929:1792442179244217940371596Caldicellulosiruptor owensensis OL chromosome, complete genomeextracellular solute-binding protein family 14e-31136
NC_014392:1935130:1937088193708819386831596Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeextracellular solute-binding protein family 14e-31136
NC_015588:2281354:2289171228917122907871617Isoptericola variabilis 225 chromosome, complete genomeextracellular solute-binding protein family 11e-30134
NC_015690:1929599:1956367195636719579831617Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-30133
NC_016935:2460795:2487578248757824891941617Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein5e-30132
NC_014652:1651671:1655312165531216569461635Caldicellulosiruptor hydrothermalis 108 chromosome, completeextracellular solute-binding protein family 13e-28126
NC_015690:4592582:4612557461255746141311575Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-26121
NC_014720:154111:1804561804561820361581Caldicellulosiruptor kronotskyensis 2002 chromosome, completeextracellular solute-binding protein family 11e-25118
NC_015690:4469775:4508042450804245096971656Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-25116
NC_016935:4233223:4262426426242642640811656Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-25116
NC_020134:205000:2194692194692209261458Clostridium stercorarium subsp. stercorarium DSM 8532, completelipoprotein LipO7e-22105
NC_009617:4436837:4459569445956944611851617Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeextracellular solute-binding protein8e-22105
NC_016582:11820671:1182934511829345118309371593Streptomyces bingchenggensis BCW-1 chromosome, complete genomeextracellular solute-binding protein3e-21103
NC_009328:1867971:1876034187603418776771644Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeABC transporter substrate-binding protein3e-20100
NC_016641:3711972:3726839372683937284461608Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-1998.2
NC_013406:4478000:4481653448165344833321680Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-1995.9
NC_014410:989698:9937249937249953971674Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,extracellular solute-binding protein family 15e-1892.8
NC_014639:227118:2408102408102423331524Bacillus atrophaeus 1942 chromosome, complete genomelipoprotein7e-1892.4
CP002207:227118:2408102408102423331524Bacillus atrophaeus 1942, complete genomelipoprotein7e-1892.4
NC_013411:2739989:2752418275241827540671650Geobacillus sp. Y412MC61, complete genomeextracellular solute-binding protein family 15e-1789.7
NC_014915:1880748:1892356189235618940051650Geobacillus sp. Y412MC52 chromosome, complete genomeextracellular solute-binding protein family 15e-1789.7
NC_010001:851671:8648768648768665461671Clostridium phytofermentans ISDg, complete genomeABC-type sugar transport system periplasmic component-like protein6e-1789.4
UCMB5137:303641:3193183193183208411524Bacillus atrophaeus UCMB-5137lipoprotein6e-1789.4
NC_014410:989698:1010411101041110120871677Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,extracellular solute-binding protein family 16e-1789.4
NC_015555:1792242:1804740180474018064071668Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeextracellular solute-binding protein family 19e-1788.6
NC_019970:929666:9337029337029353751674Thermoanaerobacterium thermosaccharolyticum M0795, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family1e-1688.6
NC_014479:736102:7497697497697513101542Bacillus subtilis subsp. spizizenii str. W23 chromosome, completelipoprotein4e-1686.7
NC_016047:876875:8925298925298940371509Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completelipoprotein LplA2e-1584.3
NC_000964:764118:7788667788667803741509Bacillus subtilis subsp. subtilis str. 168, complete genomelipoprotein3e-1584
NC_014976:2981777:2997425299742529989331509Bacillus subtilis BSn5 chromosome, complete genomelipoprotein3e-1584
NC_019896:3281193:3283105328310532846131509Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeLipoprotein LplA3e-1584
NC_017195:742298:7570477570477585551509Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completelipoprotein LplA4e-1583.2
NC_013521:302574:3069633069633085761614Sanguibacter keddieii DSM 10542, complete genomeABC-type sugar transport system, periplasmic component9e-1582
NC_016935:2347691:2357210235721023587601551Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1481.3
NC_015690:1818333:1827340182734018288901551Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1481.3
NC_016641:1369424:1370725137072513719181194Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1480.9
NC_016935:2347691:2403704240370424054431740Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-1375.9
NC_020210:1908000:1915324191532419170361713Geobacillus sp. GHH01, complete genomesugar ABC transporter substrate-binding protein1e-1275.1
NC_016641:3711972:3715558371555837172491692Paenibacillus terrae HPL-003 chromosome, complete genomesugar ABC transporter periplasmic protein8e-1272.4
NC_015690:4361000:4396368439636843980561689Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-1172
NC_015690:1818333:1874016187401618756681653Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein9e-1272
NC_014206:1745203:1759149175914917608191671Geobacillus sp. C56-T3 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-1171.6
NC_016935:4117485:4162465416246541641531689Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1170.9
NC_015690:4643869:4663966466396646654741509Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1170.9
NC_016935:4367000:4401053440105344027441692Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-1170.1
NC_019897:1224798:1264380126438012660081629Thermobacillus composti KWC4 chromosome, complete genomesugar ABC transporter substrate-binding protein2e-1067.4
NC_015690:2039215:2075053207505320765641512Paenibacillus mucilaginosus KNP414 chromosome, complete genomeputative multiple sugar transport system substrate-binding protein YtcQ4e-1066.6
NC_015732:684000:6981306981306997161587Spirochaeta caldaria DSM 7334 chromosome, complete genomeextracellular solute-binding protein family 11e-0964.7
NC_019897:763412:7707407707407720141275Thermobacillus composti KWC4 chromosome, complete genome2e-0964.7
NC_016935:2567039:2624595262459526261061512Paenibacillus mucilaginosus 3016 chromosome, complete genomeputative multiple sugar transport system substrate-binding protein YtcQ2e-0964.3
NC_013406:3583474:3619295361929536208961602Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-0964.3
NC_013406:3851877:3867011386701138687111701Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-0862
NC_016935:4813916:4816911481691148185811671Paenibacillus mucilaginosus 3016 chromosome, complete genomepolysaccharide ABC transporter substrate-binding protein1e-0861.6
NC_015690:3941113:3942182394218239438461665Paenibacillus mucilaginosus KNP414 chromosome, complete genomeextracellular solute-binding protein4e-0860.1
NC_016935:1365463:1367350136735013690141665Paenibacillus mucilaginosus 3016 chromosome, complete genomeextracellular solute-binding protein4e-0860.1
NC_013174:2564979:2566618256661825682791662Jonesia denitrificans DSM 20603, complete genomeextracellular solute-binding protein family 15e-0859.7
NC_014392:2350577:2351618235161823532641647Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeextracellular solute-binding protein family 11e-0758.9
NC_013530:3082587:3089924308992430916451722Xylanimonas cellulosilytica DSM 15894, complete genomeextracellular solute-binding protein family 12e-0757.8
NC_014720:383587:4059244059244075701647Caldicellulosiruptor kronotskyensis 2002 chromosome, completeextracellular solute-binding protein family 13e-0757.4
NC_015690:5263108:5277813527781352793961584Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-0757
NC_016935:5017317:5032020503202050336031584Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-0757
NC_016935:4326644:4333504433350443350871584Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-0756.2
NC_010001:986500:1001005100100510025761572Clostridium phytofermentans ISDg, complete genomeextracellular solute-binding protein family 11e-0655.5
NC_015690:1726000:1735520173552017370251506Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-0655.1
NC_016935:1365463:1431909143190914335161608Paenibacillus mucilaginosus 3016 chromosome, complete genomeputative sugar ABC transporter1e-0655.1
NC_015690:3941113:4012501401250140141081608Paenibacillus mucilaginosus KNP414 chromosome, complete genomeputative sugar ABC transporter1e-0655.1
NC_016935:2256000:2265714226571422672191506Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-0655.1
NC_015152:2831566:2851234285123428528051572Spirochaeta sp. Buddy chromosome, complete genomeextracellular solute-binding protein family 12e-0654.7
NC_015690:4592582:4617476461747646189781503Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein3e-0653.5
NC_016641:2815974:281617328161732816406234Paenibacillus terrae HPL-003 chromosome, complete genomesugar ABC transporter periplasmic protein7e-0652.8