Pre_GI: BLASTP Hits

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Query: NC_003304:2507000:2515653 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 2515653, End: 2516042, Length: 390

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1035342:104430210443021044691390Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-71267
NC_003063:1019674:102992110299211030454534Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-71267
NC_003304:51048:592385923859627390Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein1e-71267
NC_003063:757999:767506767506768039534Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein8e-71265
NC_003305:1297785:130671713067171307130414Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-70264