Pre_GI: BLASTP Hits

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Query: NC_003198:3586000:3604987 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 3604987, End: 3605622, Length: 636

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:4119332:411933241193324119964633Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible TetR-family trancriptional regulatory protein5e-98356
NC_009648:4656187:465778746577874658419633Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeDNA-binding transcriptional repressor FabR6e-97353
CU928160:4248621:425029842502984251002705Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional repressor1e-94345
NC_010468:4455201:447030344703034471007705Escherichia coli ATCC 8739, complete genometranscriptional regulator, TetR family2e-94345
NC_000913:4159090:415909041590904159794705Escherichia coli K12, complete genomeDNA-binding transcriptional repressor2e-94345
NC_010473:4256000:425884442588444259491648Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional repressor3e-94343
NC_005810:3493607:349521334952133495860648Yersinia pestis biovar Microtus str. 91001, complete genomeDNA-binding transcriptional repressor FabR1e-92338
NC_010939:1633000:165902516590251659657633Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeputative HTH-type transcriptional regulator5e-58224
NC_010278:1625695:165631416563141656946633Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,DNA-binding transcriptional repressor FabR5e-58224
NC_013194:2788299:280499728049972805710714Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completetranscriptional regulator, TetR family4e-23107
NC_003919:4618988:465747546574754658122648Xanthomonas axonopodis pv. citri str. 306, complete genometranscriptional regulator tetR family2e-21102
NC_007645:2294553:231984623198462320478633Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator1e-2099.8
NC_013722:3081459:308688030868803087524645Xanthomonas albilineans, complete genomeputative transcriptional regulator, tetr-family transcription regulator protein2e-2099.4
NC_015556:819503:838253838253838888636Pseudomonas fulva 12-X chromosome, complete genomeregulatory protein TetR1e-1893.2
NC_008699:1816392:183836418383641838969606Nocardioides sp. JS614, complete genomeregulatory protein, TetR5e-1581.3