Pre_GI: BLASTP Hits

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Query: NC_003063:757999:762037 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 762037, End: 763005, Length: 969

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1297785:131175113117511312632882Agrobacterium tumefaciens str. C58 chromosome linear, completecalcium-binding protein, regucalcin4e-171600
NC_012214:1355500:135734813573481358232885Erwinia pyrifoliae Ep1/96, complete genomeSenescence marker protein-305e-45181
NC_010694:1250841:125232412523241253208885Erwinia tasmaniensis, complete genomeSenescence marker protein-301e-43177
NC_015276:2804874:280487428048742805743870Marinomonas mediterranea MMB-1 chromosome, complete genomeSMP-30/Gluconolaconase/LRE-like region-containing protein8e-40164
NC_013850:1198134:119726511972651198137873Klebsiella variicola At-22 chromosome, complete genomeSMP-30/Gluconolaconase/LRE domain protein3e-36152
NC_014532:2066074:206684520668452067750906Halomonas elongata DSM 2581, complete genomehypothetical protein1e-35150
NC_009648:3192483:321218132121813213053873Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative cytoplasmic protein7e-35147
NC_006905:2805877:282661528266152827523909Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein4e-34145
NC_011884:1665888:168291016829101683791882Cyanothece sp. PCC 7425, complete genomeSMP-30/Gluconolaconase/LRE domain protein5e-34145
NC_003198:2703013:272525827252582726166909Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein8e-34144
NC_011080:2789744:281190328119032812811909Salmonella enterica subsp. enterica serovar Newport str. SL254,SMP-30/Gluconolaconase/LRE domain protein2e-33142
NC_008752:261903:264256264256265227972Acidovorax avenae subsp. citrulli AAC00-1, complete genomeSMP-30/Gluconolaconase/LRE domain protein7e-33141
NC_014483:4772856:478969747896974790617921Paenibacillus polymyxa E681 chromosome, complete genomehypothetical protein7e-33141
NC_015138:322386:328712328712329695984Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeSMP-30/Gluconolaconase/LRE-like region-containing protein2e-32140
NC_015563:1129469:115927611592761160178903Delftia sp. Cs1-4 chromosome, complete genomeSMP-30/gluconolaconase/LRE-like region-containing protein2e-32139
NC_016642:1990684:2006015200601520077391725Pseudovibrio sp. FO-BEG1 chromosome, complete genomeSMP-30/Gluconolaconase/LRE-like region3e-31136
NC_008095:3785848:380368138036813804574894Myxococcus xanthus DK 1622, complete genomesenescence marker protein-30 family protein4e-30132
NC_013037:6281164:633414563341456334990846Dyadobacter fermentans DSM 18053, complete genomeSMP-30/Gluconolaconase/LRE domain protein5e-30131
NC_011663:2568190:257487725748772575869993Shewanella baltica OS223 chromosome, complete genomeSMP-30/gluconolaconase/LRE domain-containing protein8e-29127
NC_007953:1434705:143724314372431438127885Burkholderia xenovorans LB400 chromosome 3, complete sequenceputative senescence marker protein-30 (SMP-30)9e-28124
NC_015594:160848:165694165694166629936Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeSMP-30/gluconolaconase/LRE-like region-containing protein1e-26120
NC_008254:3980327:399315439931543994023870Mesorhizobium sp. BNC1, complete genomeSMP-30/Gluconolaconase/LRE-like region2e-26120
NC_009436:1679265:168114516811451682023879Enterobacter sp. 638, complete genomeSMP-30/gluconolaconase/LRE domain-containing protein1e-25117
NC_017955:3006500:301042430104243011266843Modestobacter marinus, complete genomegluconolactonase2e-24113
NC_009338:5052000:506997250699725070838867Mycobacterium gilvum PYR-GCK chromosome, complete genomeSMP-30/gluconolaconase/LRE domain-containing protein4e-24112
NC_011959:1965158:196515819651581966039882Thermomicrobium roseum DSM 5159, complete genomeSenescence marker protein-30 (SMP-30)3e-21102
NC_009921:593665:599466599466600350885Frankia sp. EAN1pec, complete genomeSMP-30/Gluconolaconase/LRE domain protein6e-21101
NC_002689:979191:980491980491981339849Thermoplasma volcanium GSS1, complete genomePredicted gluconolactonase5e-2098.6
NC_014221:3175013:319032131903213191148828Truepera radiovictrix DSM 17093 chromosome, complete genomeSMP-30/Gluconolaconase/LRE domain protein5e-2098.6
NC_008596:4043213:407896640789664079841876Mycobacterium smegmatis str. MC2 155, complete genomecalcium-binding protein3e-1686.3
NC_016612:5231065:526614252661425267002861Klebsiella oxytoca KCTC 1686 chromosome, complete genomeSMP-30/gluconolactonase/LRE family protein9e-1684.7
NC_017904:3415700:344654734465473447209663Mycobacterium sp. MOTT36Y chromosome, complete genomeSMP-30/gluconolaconase/LRE domain-containing protein3e-1582.8
NC_014625:1903277:191891419189141919783870Ketogulonicigenium vulgare Y25 chromosome, complete genomecalcium-binding protein6e-1581.6
NC_010086:1816378:181904218190421819971930Burkholderia multivorans ATCC 17616 chromosome 2, completeSMP-30/Gluconolaconase/LRE domain protein5e-1272
NC_014830:335380:357682357682358581900Intrasporangium calvum DSM 43043 chromosome, complete genomegluconolactonase3e-1169.3
NC_009482:1652329:166453216645321665440909Synechococcus sp. RCC307 chromosome, complete genomegluconolactonase7e-1168.2
NC_015312:1893945:189960018996001900451852Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeSMP-30/Gluconolaconase/LRE-like region-containing protein3e-1066.2
NC_020209:47504:866218662187166546Pseudomonas poae RE*1-1-14, complete genomegluconolactonase4e-0858.9
NC_009380:725870:740014740014740937924Salinispora tropica CNB-440 chromosome, complete genomegluconolactonase8e-0858.2
NC_009615:3146376:315450031545003155387888Parabacteroides distasonis ATCC 8503 chromosome, complete genomegluconolactonase2e-0756.6
NC_009953:691686:713829713829714752924Salinispora arenicola CNS-205 chromosome, complete genomegluconolactonase3e-0756.2
NC_010162:2469915:2471475247147524725271053Sorangium cellulosum 'So ce 56', complete genomehypothetical protein7e-0755.1
NC_012731:5074000:5077439507743950784551017Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative outer membrane gluconolactonase2e-0653.9
NC_009648:4359875:4363260436326043642761017Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative outer membrane protein; gluconolactonase2e-0653.5
NC_008577:1455000:148622614862261486606381Shewanella sp. ANA-3 chromosome 1, complete sequenceSmp-30/Cgr1 family protein4e-0652.4
NC_011283:105245:1182381182381192541017Klebsiella pneumoniae 342 chromosome, complete genomeSMP-30/gluconolactonase/LRE family protein5e-0652
NC_013850:109500:1234341234341244501017Klebsiella variicola At-22 chromosome, complete genomeGluconolactonase5e-0652
NC_018581:4992952:501353050135305014450921Gordonia sp. KTR9 chromosome, complete genomeGluconolactonase8e-0651.6