Pre_GI: SEQWORD Parameters

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




Query: NC_012781:751757 Eubacterium rectale ATCC 33656, complete genome

Host Lineage: Eubacterium rectale; Eubacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Eubacterium rectale ATCC 33656 was isolated from human feces. This genus has been isolated as normal flora from feces, rumen, and periodontal tissue. Eubacterium spp. are thought to play a beneficial role in maintaining the normal ecology of the large intestine, in part by producing chemicals like butyric acid which act to inhibit the growth of other bacteria. These organisms are occasionally isolated from wounds and abscesses and may be an opportunistic pathogen. This genus has also been isolated from sewage and soil.



Query PS = 61.2377

Lower LimitUpper Limit



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

IslandHost DescriptionPSNeighboursBLASTN
NC_018665:1*Exiguobacterium antarcticum B7 chromosome, complete genome56.2465NeighboursBLASTN
NC_004663:3827521*Bacteroides thetaiotaomicron VPI-5482, complete genome56.2949NeighboursBLASTN
NC_014220:2239594*Syntrophothermus lipocalidus DSM 12680 chromosome, complete genome56.301NeighboursBLASTN
NC_017160:396600Yersinia pestis D182038 chromosome, complete genome56.3101NeighboursBLASTN
NC_008526:2489196*Lactobacillus casei ATCC 334, complete genome56.3374NeighboursBLASTN
NC_015565:530000*Desulfotomaculum carboxydivorans CO-1-SRB chromosome, complete56.5111NeighboursBLASTN
NC_007907:2830574*Desulfitobacterium hafniense Y51, complete genome56.5386NeighboursBLASTN
NC_010513:1128000Xylella fastidiosa M12 chromosome, complete genome56.5507NeighboursBLASTN
NC_016816:1823127Pantoea ananatis LMG 5342, complete genome56.5507NeighboursBLASTN
NC_003228:2245181Bacteroides fragilis NCTC 9343, complete genome56.5751NeighboursBLASTN
NC_016602:2037162*Vibrio furnissii NCTC 11218 chromosome 1, complete sequence56.6056NeighboursBLASTN
NC_016612:2009927*Klebsiella oxytoca KCTC 1686 chromosome, complete genome56.6391NeighboursBLASTN
NC_020134:2295092*Clostridium stercorarium subsp. stercorarium DSM 8532, complete56.7289NeighboursBLASTN
NC_009012:3653111*Clostridium thermocellum ATCC 27405, complete genome56.7345NeighboursBLASTN
NC_014650:475662Geobacillus sp. Y4.1MC1 chromosome, complete genome56.7487NeighboursBLASTN
NC_017190:424000Bacillus amyloliquefaciens LL3 chromosome, complete genome56.8005NeighboursBLASTN
NC_004663:5099845*Bacteroides thetaiotaomicron VPI-5482, complete genome56.8796NeighboursBLASTN
NC_016602:2586044*Vibrio furnissii NCTC 11218 chromosome 1, complete sequence56.9436NeighboursBLASTN
NC_016445:338288Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete56.9527NeighboursBLASTN
NC_020064:1501441Serratia marcescens FGI94, complete genome56.9558NeighboursBLASTN
NC_016445:2938887*Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete56.9588NeighboursBLASTN
NC_015760:123929*Streptococcus salivarius CCHSS3, complete genome56.971NeighboursBLASTN
NC_016848:547115Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete56.9771NeighboursBLASTN
NC_017515:2194500*Neisseria meningitidis M04-240196 chromosome, complete genome57.0806NeighboursBLASTN
NC_014933:3015678Bacteroides helcogenes P 36-108 chromosome, complete genome57.105NeighboursBLASTN
NC_013715:2001862*Rothia mucilaginosa DY-18, complete genome57.1065NeighboursBLASTN
NC_014644:1275038Gardnerella vaginalis ATCC 14019 chromosome, complete genome57.2725NeighboursBLASTN
NC_017317:1291294Corynebacterium ulcerans 809 chromosome, complete genome57.3121BLASTN
NC_016860:4649274*Salmonella enterica subsp. enterica serovar Typhimurium str57.3639NeighboursBLASTN
NC_015589:2878000*Desulfotomaculum ruminis DSM 2154 chromosome, complete genome57.373NeighboursBLASTN
NC_006347:3199511Bacteroides fragilis YCH46, complete genome57.4348NeighboursBLASTN
NC_009615:3308538*Parabacteroides distasonis ATCC 8503 chromosome, complete genome57.5527BLASTN
NC_013730:1342500*Spirosoma linguale DSM 74, complete genome57.912NeighboursBLASTN
NC_007907:225948*Desulfitobacterium hafniense Y51, complete genome58.0169NeighboursBLASTN
NC_016787:135677*Corynebacterium diphtheriae HC03 chromosome, complete genome58.1NeighboursBLASTN
NC_021175:1973880Streptococcus oligofermentans AS 1.3089, complete genome58.1283NeighboursBLASTN
NC_014376:693820*Clostridium saccharolyticum WM1 chromosome, complete genome58.2075NeighboursBLASTN
NC_017507:43135Marinobacter adhaerens HP15 plasmid pHP-187, complete sequence58.375NeighboursBLASTN
NC_016857:3924000*Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7458.4267NeighboursBLASTN
NC_016810:3923988*Salmonella enterica subsp. enterica serovar Typhimurium str58.4267NeighboursBLASTN
NC_016789:199503*Corynebacterium diphtheriae PW8 chromosome, complete genome58.4298BLASTN
NC_018515:3959681*Desulfosporosinus meridiei DSM 13257 chromosome, complete genome58.4572NeighboursBLASTN
NC_016800:163436*Corynebacterium diphtheriae BH8 chromosome, complete genome58.4785NeighboursBLASTN
NC_016613:221476Vibrio sp. EJY3 chromosome 1, complete sequence59.2307NeighboursBLASTN
NC_015683:1296000Corynebacterium ulcerans BR-AD22 chromosome, complete genome59.6144BLASTN
NC_012781:751757*Eubacterium rectale ATCC 33656, complete genome61.2377NeighboursBLASTN