Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013361: Escherichia coli O26:H11 str. 11368 chromosome, complete genome

NCBI: NC_013361

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli O26:H11 str. 11368 is a human enterohemorrhagic E. coli which attaches to and effaces cells in the large intestine. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111382*3111619735Island text2.0689934.950132.8633Neighbours41BLASTN11382.gbk
2145461*16993024470Island text1.8568835.998321.1353Neighbours41BLASTN+IslandViewer 145461.gbk
3313540*34595932420Island text2.7113645.71924.1961Neighbours41BLASTN+IslandViewer 313540.gbk
464951867234622829Island text1.5180733.201624.3148Neighbours41BLASTN+IslandViewer 649518.gbk
51284579131019025612Island text2.2190439.761426.8533Neighbours41BLASTN+IslandViewer 1284579.gbk
61335166135642121256Island text1.8748233.426621.5739Neighbours41BLASTN+IslandViewer 1335166.gbk
71558423158043122009Island text2.0206134.145333.0034Neighbours41BLASTN+IslandViewer 1558423.gbk
81593543161287819336Island text1.5034340.248138.1411Neighbours51BLASTNIslandViewer 1593543.gbk
91634226*165759923374Island text2.4279436.672717.7524Neighbours41BLASTNIslandViewer 1634226.gbk
101754346*178584031495Island text2.6756840.945727.5533Neighbours41BLASTN+IslandViewer 1754346.gbk
111896446192009923654Island text1.4645638.229631.8309Neighbours51BLASTNIslandViewer 1896446.gbk
122047170207046823299Island text2.1108633.272922.7563Neighbours41BLASTN+IslandViewer 2047170.gbk
132138716216159922884Island text1.911136.902823.5487Neighbours41BLASTN+IslandViewer 2138716.gbk
142169948219373723790Island text1.4859337.761432.2756Neighbours51BLASTN+IslandViewer 2169948.gbk
152591829*262772835900Island text3.737442.415519.6863Neighbours41BLASTN+IslandViewer 2591829.gbk
162757168277965022483Island text1.5562636.027928.0805BLASTN+2757168.gbk
172848949287659927651Island text3.3551541.358727.7483Neighbours41BLASTNIslandViewer 2848949.gbk
183112023313511023088Island text2.4162636.41529.3111Neighbours41BLASTN+IslandViewer 3112023.gbk
193254000327671422715Island text2.2195332.975131.9995Neighbours41BLASTN+IslandViewer 3254000.gbk
203287671331056822898Island text1.8423933.508730.2055Neighbours41BLASTN+IslandViewer 3287671.gbk
213313284333869225409Island text3.1828840.50222.5823Neighbours41BLASTNIslandViewer 3313284.gbk
223597812362673828927Island text1.440537.244753.149Neighbours41BLASTNIslandViewer 3597812.gbk
233651150367648425335Island text3.5053444.290524.6431Neighbours41BLASTN+IslandViewer 3651150.gbk
243823347*384742024074Island text2.4123940.294826.6334Neighbours41BLASTNIslandViewer 3823347.gbk
253867558390459937042Island text1.6903530.401931.5568Neighbours41BLASTN+IslandViewer 3867558.gbk
264102894412145318560Island text5.3169545.165118.0495Neighbours41BLASTN+IslandViewer 4102894.gbk
274566779458834921571Island text2.2521231.484122.4632Neighbours41BLASTN+4566779.gbk
284959323*497906119739Island text2.5370134.510815.7413Neighbours41BLASTN+4959323.gbk
294991020*501535724338Island text2.0110833.805921.5556Neighbours41BLASTNIslandViewer 4991020.gbk
305319497*537527455778Island text2.7885537.775618.0052Neighbours41BLASTN+IslandViewer 5319497.gbk
315580741560019619456Island text3.081241.991423.0836Neighbours41BLASTNIslandViewer 5580741.gbk