Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011751: Escherichia coli UMN026 chromosome, complete genome

NCBI: NC_011751

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a woman with uncomplicated acute cystitis in 1999 in the USA. This strain is drug resistant. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112000*3835526356Island text2.7538136.642326.3574Neighbours41BLASTNIslandViewer 12000.gbk
225683028052023691Island text1.6909432.833842.783Neighbours41BLASTN+IslandViewer 256830.gbk
3348000*37070122702Island text1.9669430.702824.059Neighbours41BLASTNIslandViewer 348000.gbk
4643976*66569121716Island text1.755830.780614.5618Neighbours41BLASTN+IslandViewer 643976.gbk
568041770234121925Island text1.8967233.035528.9471Neighbours41BLASTN+IslandViewer 680417.gbk
61377457140058923133Island text1.4415236.81337.063Neighbours51BLASTN+IslandViewer 1377457.gbk
71405381*142709921719Island text1.5618530.643426.6598Neighbours41BLASTN+IslandViewer 1405381.gbk
81446073147872932657Island text2.6132637.066120.5633Neighbours41BLASTN+IslandViewer 1446073.gbk
91714131174129427164Island text2.5258238.553926.6308Neighbours41BLASTN+IslandViewer 1714131.gbk
101770376179379823423Island text2.0828631.853619.6449Neighbours41BLASTN+IslandViewer 1770376.gbk
111859606188482925224Island text1.8511236.200623.915Neighbours41BLASTN+IslandViewer 1859606.gbk
122281653*230787726225Island text1.5745432.961127.2623Neighbours11BLASTN+IslandViewer 2281653.gbk
132327014235440227389Island text3.2915542.518520.0624Neighbours41BLASTN+IslandViewer 2327014.gbk
142395882242503029149Island text3.5844339.03527.4029Neighbours41BLASTN+IslandViewer 2395882.gbk
152768864278709918236Island text2.1033330.990621.8388Neighbours41BLASTN+IslandViewer 2768864.gbk
163048490*309200343514Island text2.1618634.592223.8741Neighbours41BLASTN+IslandViewer 3048490.gbk
173285646*333126645621Island text4.8665143.6420.1618Neighbours41BLASTN+IslandViewer 3285646.gbk
183453683351238358701Island text1.6670737.771529.5006Neighbours41BLASTN+IslandViewer 3453683.gbk
193530954356883437881Island text5.7184345.295615.3151Neighbours41BLASTN+IslandViewer 3530954.gbk
203710786373513424349Island text1.6478231.930932.0136Neighbours41BLASTN+3710786.gbk
213984236400841624181Island text2.0785334.431127.0526Neighbours41BLASTNIslandViewer 3984236.gbk
224074586409524320658Island text2.0782931.523619.3913Neighbours41BLASTN+4074586.gbk
234251296*427504623751Island text2.7036735.325519.2106Neighbours41BLASTNIslandViewer 4251296.gbk
244293966*431867224707Island text2.688835.836828.5189Neighbours41BLASTN+IslandViewer 4293966.gbk
254373961440053726577Island text3.7307140.875420.1076Neighbours41BLASTN+IslandViewer 4373961.gbk
264795928481882822901Island text1.4846432.095127.5368Neighbours41BLASTN+4795928.gbk
274992500501338720888Island text1.7428435.230228.8017Neighbours11BLASTN+IslandViewer 4992500.gbk
285070597508906918473Island text1.868630.657218.4797Neighbours41BLASTN+IslandViewer 5070597.gbk