Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006361: Nocardia farcinica IFM 10152, complete genome

NCBI: NC_006361

Host Lineage: Nocardia farcinica; Nocardia; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This type strain was isolated from the bronchus of a male Japanese patient. Opportunistic human pathogen. This genus was originally described from specimens isolated by plating soil suspensions on diagnostic sensitivity test plates augmented with antifungal agents. Organisms in this genus cause opportunistic human pulmonary and systemic nocardiosis. This can complicate existing debilitating conditions such as leukemia, lymphoma, or other neoplasms, or illnesses in patients with compromised immune systems.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
149830551709918795Island text1.685612.939815.7906Neighbours11BLASTN498305.gbk
271494473378418841Island text1.7274711.597210.4763Neighbours11BLASTN+714944.gbk
3792904*81281219909Island text1.5886115.77716.3865Neighbours11BLASTN+792904.gbk
41547034*157675929726Island text2.0069315.271223.2373Neighbours11BLASTN+1547034.gbk
51665378170959944222Island text1.5632814.717218.0933Neighbours11BLASTN+1665378.gbk
61720031174529925269Island text2.180614.317.8912Neighbours11BLASTN1720031.gbk
71827991184618418194Island text1.6092213.180920.4897Neighbours11BLASTN1827991.gbk
82225072*225678031709Island text3.0966417.695516.8305Neighbours11BLASTN+2225072.gbk
92534192255470320512Island text2.207312.106613.6537Neighbours11BLASTN+2534192.gbk
102920028293981019783Island text2.0241811.32213.7938Neighbours11BLASTN+2920028.gbk
113047788307176223975Island text1.7706111.982719.5856Neighbours11BLASTN+3047788.gbk
123132000316145129452Island text1.4426415.369631.234Neighbours11BLASTN+3132000.gbk
133615322363714921828Island text1.5980213.329121.0727Neighbours11BLASTN+3615322.gbk
144098469*414791249444Island text1.6813114.890419.8582Neighbours11BLASTN+4098469.gbk
154149701418465734957Island text1.5321314.299617.8239Neighbours11BLASTN4149701.gbk
164521820454440122582Island text1.4457612.931711.731Neighbours11BLASTN+4521820.gbk
174574536459345018915Island text1.537710.928410.0865Neighbours11BLASTN4574536.gbk
184597718*462893531218Island text1.8440516.126720.9531Neighbours11BLASTN+4597718.gbk
195146000*517359927600Island text2.3879415.135617.4469Neighbours11BLASTN+5146000.gbk
205546232556613019899Island text1.5329812.548614.4932Neighbours11BLASTN+5546232.gbk