Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_005362: Lactobacillus johnsonii NCC 533, complete genome

NCBI: NC_005362

Host Lineage: Lactobacillus johnsonii; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain is a human isolate from the Nestle strain collection that has been studied for immunomodulation as well as pathogen inhibition. Probiotic microorganism. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus johnsonii is found in the human gut. It is a member of the acidophilus group of intestinal lactobacilli that has been extensively studied for their "probiotic" activities.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1528487339820551Island text1.5661519.181732.7588Neighbours21BLASTN52848.gbk
2550823*57585325031Island text3.8884124.81843.8295Neighbours21BLASTN550823.gbk
31289835130838518551Island text1.6723718.464326.3126Neighbours21+IslandViewer 1289835.gbk
41651767*169076238996Island text3.3786226.954344.6384Neighbours21BLASTN1651767.gbk
51796696181473318038Island text1.7079619.406630.3447Neighbours21BLASTN+1796696.gbk
61870620*189402323404Island text3.9409826.972743.4246Neighbours21BLASTN+1870620.gbk
71954443197558921147Island text1.6583822.07326.5938Neighbours21BLASTN+IslandViewer 1954443.gbk