Pre_GI Gene

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Host: NC_009092 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009092:1263964 Shewanella loihica PV-4, complete genome

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12639641264230267ribosomal protein S20QuickGO ontologyBLASTP
126447812660371560integral membrane protein MviNQuickGO ontologyBLASTP
12661031267038936riboflavin biosynthesis protein RibFQuickGO ontologyBLASTP
126707112698932823isoleucyl-tRNA synthetaseQuickGO ontologyBLASTP
12699031270415513lipoprotein signal peptidaseQuickGO ontologyBLASTP
12704191270841423peptidylprolyl isomerase FKBP-typeQuickGO ontologyBLASTP
12708441271794951hydroxymethylbutenyl pyrophosphate reductaseQuickGO ontologyBLASTP
12720261272547522type IV pilus modification protein PilVQuickGO ontologyBLASTP
12725481273534987prepilin-type cleavagemethylation-like proteinQuickGO ontologyBLASTP
12735401273974435type IV pilus assembly protein PilXQuickGO ontologyBLASTP
127397912775273549type IV pilin biogenesis protein putativeQuickGO ontologyBLASTP
12775311277923393methylation site containing proteinQuickGO ontologyBLASTP
12782591278750492methylation site containing proteinQuickGO ontologyBLASTP
12788871279399513type IV pilus biogenesis protein putativeQuickGO ontologyBLASTP
12796501279988339nitrogen regulatory protein P-IIQuickGO ontologyBLASTP
128007312810921020transcriptional regulator LacI familyQuickGO ontologyBLASTP
128150512841292625TonB-dependent receptorQuickGO ontologyBLASTP
128425212857781527tryptophan halogenaseQuickGO ontologyBLASTP
12858761286595720SapC family proteinQuickGO ontologyBLASTP
128789812905642667Beta-N-acetylhexosaminidaseQuickGO ontologyBLASTP
12908761291775900ATPase BadFBadGBcrABcrD typeQuickGO ontologyBLASTP
129184312929731131N-acetylglucosamine-6-phosphate deacetylaseQuickGO ontologyBLASTP