Pre_GI Gene

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Host: NC_013716 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013716:1298932 Citrobacter rodentium ICC168, complete genome

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12981921298935744ABC transporter ATP-binding componentQuickGO ontologyBLASTP
129893213005001569ABC transporter permease componentQuickGO ontologyBLASTP
130072313017901068ABC transporter periplasmic binding componentQuickGO ontologyBLASTP
13017871302725939LysR-family transcriptional regulatorQuickGO ontologyBLASTP
130297913040251047spermidineputrescine ABC transporter substrate-binding proteinQuickGO ontologyBLASTP
13040771304868792spermidineputrescine ABC transporter permease proteinQuickGO ontologyBLASTP
13064641306733270putative tail fibre proteinQuickGO ontologyBLASTP
130696013093082349putative T3SS effector protein EspX7QuickGO ontologyBLASTP
131367813150391362putative T3SS effector protein EspKQuickGO ontologyBLASTP
13154021316265864spermidineputrescine ABC transporter permease proteinQuickGO ontologyBLASTP
131624913173851137spermidineputrescine ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
131761413188401227peptidase TQuickGO ontologyBLASTP
13190871320067981ISCro4 transposaseQuickGO ontologyBLASTP
132023813213591122hypothetical proteinBLASTP
132145313229131461two-component sensor kinaseQuickGO ontologyBLASTP
13229131323584672two-component response regulatorQuickGO ontologyBLASTP
132401813250281011ISCro5 transposaseQuickGO ontologyBLASTP
132512813264981371adenylosuccinate lyaseQuickGO ontologyBLASTP
13265021327143642hypothetical proteinBLASTP