Pre_GI: BLASTN Hits

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Query: NC_013716:1298932 Citrobacter rodentium ICC168, complete genome

Start: 1298932, End: 1327143, Length: 28212

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
AP010958:13057121305712133215626445Escherichia coli O103:H2 str. 12009 DNA, complete genome08441BLASTN svgBLASTP svg
NC_002695:15713891571389159815826770Escherichia coli O157:H7 str. Sakai, complete genome07095BLASTN svgBLASTP svg
NC_002655:16559441655944168171125768Escherichia coli O157:H7 EDL933, complete genome07063BLASTN svgBLASTP svg
NC_009792:17399701739970176500625037Citrobacter koseri ATCC BAA-895, complete genome02331BLASTN svgBLASTP svg
NC_009801:1296488*1296488132313526648Escherichia coli E24377A, complete genome01959BLASTN svgBLASTP svg
CU928160:1232510*1232510125609923590Escherichia coli IAI1 chromosome, complete genome01959BLASTN svgBLASTP svg
CU928145:1300863*1300863132330622444Escherichia coli 55989 chromosome, complete genome01951BLASTN svgBLASTP svg
NC_010658:1193225*1193225121671123487Shigella boydii CDC 3083-94, complete genome01951BLASTN svgBLASTP svg
NC_011748:1300863*1300863132330622444Escherichia coli 55989, complete genome01951BLASTN svgBLASTP svg
NC_011751:13774571377457140058923133Escherichia coli UMN026 chromosome, complete genome01951BLASTN svgBLASTP svg
NC_011751:1405381*1405381142709921719Escherichia coli UMN026 chromosome, complete genome01943BLASTN svgBLASTP svg
AP010958:1339263*1339263136273323471Escherichia coli O103:H2 str. 12009 DNA, complete genome01943BLASTN svgBLASTP svg
CP002185:1298675*1298675132326124587Escherichia coli W, complete genome01935BLASTN svgBLASTP svg
CP002516:2786000*2786000281204426045Escherichia coli KO11, complete genome01935BLASTN svgBLASTP svg
NC_010498:1995500*1995500202472729228Escherichia coli SMS-3-5, complete genome01907BLASTN svgBLASTP svg
NC_004431:13529061352906137651123606Escherichia coli CFT073, complete genome01903BLASTN svgBLASTP svg
AC_000091:1191353*1191353122209930747Escherichia coli W3110 DNA, complete genome01887BLASTN svgBLASTP svg
NC_000913:1188999*1188999122144532447Escherichia coli K12, complete genome01887BLASTN svgBLASTP svg
NC_010468:2699000*2699000272285223853Escherichia coli ATCC 8739, complete genome01887BLASTN svgBLASTP svg
NC_010473:1245284*1245284127191826635Escherichia coli str. K-12 substr. DH10B, complete genome01887BLASTN svgBLASTP svg
NC_011149:1870931*1870931190072529795Salmonella enterica subsp. enterica serovar Agona str. SL483,01752BLASTN svgBLASTP svg
NC_011080:1321268*1321268133914217875Salmonella enterica subsp. enterica serovar Newport str. SL254,01721BLASTN svgBLASTP svg
NC_011083:1323827*1323827134240718581Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,01713BLASTN svgBLASTP svg
NC_014121:2514544*2514544255659942056Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01631BLASTN svgBLASTP svg
NC_013850:3340882*3340882337329232411Klebsiella variicola At-22 chromosome, complete genome01590BLASTN svgBLASTP svg
AP010958:14725061472506149531022805Escherichia coli O103:H2 str. 12009 DNA, complete genome01415BLASTN svgBLASTP svg
NC_002655:19091391909139193312123983Escherichia coli O157:H7 EDL933, complete genome01360BLASTN svgBLASTP svg
NC_002695:17946351794635181624421610Escherichia coli O157:H7 str. Sakai, complete genome01352BLASTN svgBLASTP svg
NC_002655:22647732264773228824723475Escherichia coli O157:H7 EDL933, complete genome01352BLASTN svgBLASTP svg
AP010958:2134556*2134556215269018135Escherichia coli O103:H2 str. 12009 DNA, complete genome01352BLASTN svgBLASTP svg
NC_002695:28939512893951291868324733Escherichia coli O157:H7 str. Sakai, complete genome01336BLASTN svgBLASTP svg
NC_002695:26554452655445267786922425Escherichia coli O157:H7 str. Sakai, complete genome01300BLASTN svgBLASTP svg
AP010958:86786986786989060722739Escherichia coli O103:H2 str. 12009 DNA, complete genome01289BLASTN svgBLASTP svg
NC_002655:27306592730659276187131213Escherichia coli O157:H7 EDL933, complete genome01273BLASTN svgBLASTP svg
AP010958:22729192272919229869725779Escherichia coli O103:H2 str. 12009 DNA, complete genome01273BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome01243BLASTN svgBLASTP svg
NC_002655:91965491965493956619913Escherichia coli O157:H7 EDL933, complete genome01243BLASTN svgBLASTP svg
NC_020064:1962172*1962172199309930928Serratia marcescens FGI94, complete genome01096BLASTN svgBLASTP svg
NC_015566:2125403*2125403214809922697Serratia sp. AS12 chromosome, complete genome01070BLASTN svgBLASTP svg
NC_015567:2125415*2125415214809922685Serratia sp. AS9 chromosome, complete genome01070BLASTN svgBLASTP svg
NC_014562:983398*983398101509931702Pantoea vagans C9-1 chromosome, complete genome01005BLASTN svgBLASTP svg
NC_002695:21583142158314218207123758Escherichia coli O157:H7 str. Sakai, complete genome0987BLASTN svgBLASTP svg
NC_009832:2211154*2211154224619035037Serratia proteamaculans 568, complete genome0971BLASTN svgBLASTP svg
NC_020211:22065002206500222782621327Serratia marcescens WW4, complete genome0785BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome0763BLASTN svgBLASTP svg
NC_012912:2216749*2216749224082124073Dickeya zeae Ech1591, complete genome0759BLASTN svgBLASTP svg
NC_011750:91995391995393907219120Escherichia coli IAI39 chromosome, complete genome0757BLASTN svgBLASTP svg
NC_012880:2425330*2425330245003424705Dickeya dadantii Ech703, complete genome0650BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome6e-168599BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome6e-168599BLASTN svgBLASTP svg
AP010958:92293792293795098628050Escherichia coli O103:H2 str. 12009 DNA, complete genome6e-168599BLASTN svgBLASTP svg
NC_009800:1254409*1254409127914624738Escherichia coli HS, complete genome3e-151543BLASTN svgBLASTP svg
NC_003197:1320861*1320861134738426524Salmonella typhimurium LT2, complete genome2e-134488BLASTN svgBLASTP svg
AP010958:60471960471962691322195Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-111410BLASTN svgBLASTP svg
NC_009800:16575501657550168574228193Escherichia coli HS, complete genome2e-106394BLASTN svgBLASTP svg
NC_021066:3028421*3028421305110422684Raoultella ornithinolytica B6, complete genome6e-91343BLASTN svgBLASTP svg
NC_013716:33278813327881336492937049Citrobacter rodentium ICC168, complete genome1e-85325BLASTN svgBLASTP svg
NC_002655:3538656*3538656358072742072Escherichia coli O157:H7 EDL933, complete genome1e-73285BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome7e-63250BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome7e-63250BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome7e-63250BLASTN svgBLASTP svg
NC_008563:20413452041345206368122337Escherichia coli APEC O1, complete genome7e-63250BLASTN svgBLASTP svg
NC_010498:12101451210145123409923955Escherichia coli SMS-3-5, complete genome3e-59238BLASTN svgBLASTP svg
NC_008563:15054051505405154006134657Escherichia coli APEC O1, complete genome4e-55224BLASTN svgBLASTP svg
NC_004431:30126683012668303118918522Escherichia coli CFT073, complete genome2e-54222BLASTN svgBLASTP svg
NC_011750:19313841931384195623124848Escherichia coli IAI39 chromosome, complete genome2e-54222BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome2e-54222BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome2e-53218BLASTN svgBLASTP svg
NC_013282:1804909*1804909182709922191Cronobacter turicensis, complete genome4e-52214BLASTN svgBLASTP svg
NC_011751:68041768041770234121925Escherichia coli UMN026 chromosome, complete genome1e-51212BLASTN svgBLASTP svg
NC_013716:1756545*1756545177694320399Citrobacter rodentium ICC168, complete genome6e-48200BLASTN svgBLASTP svg
NC_012560:2906459*2906459292809921641Azotobacter vinelandii DJ, complete genome1e-45192BLASTN svgBLASTP svg
NC_021150:2906471*2906471292809921629Azotobacter vinelandii CA6, complete genome1e-45192BLASTN svgBLASTP svg
NC_011080:27224922722492274217119680Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-37165BLASTN svgBLASTP svg
NC_003197:27207262720726274079420069Salmonella typhimurium LT2, complete genome3e-37165BLASTN svgBLASTP svg
NC_007712:1791766*1791766181730825543Sodalis glossinidius str. 'morsitans', complete genome3e-34155BLASTN svgBLASTP svg
NC_015968:511282*51128254179030509Enterobacter asburiae LF7a chromosome, complete genome2e-32149BLASTN svgBLASTP svg
NC_010995:2855595*2855595294415488560Cellvibrio japonicus Ueda107, complete genome3e-31145BLASTN svgBLASTP svg
NC_012880:16134851613485164274129257Dickeya dadantii Ech703, complete genome3e-31145BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str4e-30141BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-25125BLASTN svgBLASTP svg
NC_004547:442927*44292748635443428Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-21113BLASTN svgBLASTP svg
NC_015563:63576536357653638561927967Delftia sp. Cs1-4 chromosome, complete genome4e-18101BLASTN svgBLASTP svg
NC_015677:39657163965716398829822583Ramlibacter tataouinensis TTB310 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_012559:23532362353236237609922864Laribacter hongkongensis HLHK9, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_013716:5141269*5141269517008828820Citrobacter rodentium ICC168, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_008767:27375927375929740423646Neisseria meningitidis FAM18, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_008209:25366325366327713323471Roseobacter denitrificans OCh 114, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_008752:5213431*5213431523609922669Acidovorax avenae subsp. citrulli AAC00-1, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_016002:20373742037374208061443241Pseudogulbenkiania sp. NH8B, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015224:14402831440283145849618214Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-1075.8BLASTN svgBLASTP svg
NC_002505:15078601507860152884320984Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete1e-0869.9BLASTN svgBLASTP svg
NC_007498:3085511*3085511310809922589Pelobacter carbinolicus DSM 2380, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_006177:12546351254635128152926895Symbiobacterium thermophilum IAM 14863, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013524:96903896903899379224755Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:24763342476334249822421891Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015138:5276857*5276857530246825612Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete2e-0765.9BLASTN svgBLASTP svg
NC_015850:19470001947000199559948600Acidithiobacillus caldus SM-1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_019940:1670262*1670262169388723626Thioflavicoccus mobilis 8321 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014168:1724993*1724993175913834146Segniliparus rotundus DSM 44985 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013093:31578973157897318209324197Actinosynnema mirum DSM 43827, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012914:33675033675036344026691Paenibacillus sp. JDR-2, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_020063:4127161*4127161415360026440Enterobacteriaceae bacterium strain FGI 57, complete genome3e-0661.9BLASTN svgBLASTP svg