Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:2337024 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
23370242337713690enoyl-CoA hydrataseQuickGO ontologyBLASTP
23379002338118219hypothetical protein
2338212233830190tRNA-SerQuickGO ontologyBLASTP
233835723393641008phage integrase family proteinQuickGO ontologyBLASTP
233936423406411278hypothetical proteinBLASTP
234079523419851191zonular occludens toxinQuickGO ontologyBLASTP
23419852342302318hypothetical proteinBLASTP
234230423436201317hypothetical proteinBLASTP
23439742344177204hypothetical proteinBLASTP
23441872344366180hypothetical proteinBLASTP
23443822344750369hypothetical proteinBLASTP
23448692344985117BLASTP
23449992345286288hypothetical protein
23452912345581291hypothetical proteinBLASTP
23456212345836216hypothetical proteinBLASTP
23459672346236270hypothetical proteinBLASTP
23463042347131828hypothetical proteinBLASTP
23471792347838660hypothetical proteinBLASTP
23478932348642750hypothetical proteinBLASTP
23498022350131330plasmid stabilization system proteinQuickGO ontologyBLASTP
23501282350364237CopGArcMetJ family transcriptional regulatorQuickGO ontologyBLASTP
23508102351016207hypothetical proteinBLASTP
235112423522661143hypothetical proteinBLASTP
23523012352873573translation initiation factor 5A eIF-5AQuickGO ontologyBLASTP
23529622353957996LysR family transcriptional regulatorQuickGO ontologyBLASTP
23540262354790765hypothetical proteinBLASTP
23547852355639855LysR family transcriptional regulatorQuickGO ontologyBLASTP
23557372355961225hypothetical proteinBLASTP
23559852356929945hypothetical proteinBLASTP
23569292357402474hypothetical proteinBLASTP
235741723586101194hypothetical proteinBLASTP
23586072358996390hypothetical proteinBLASTP
23590412359796756peptidase M48 Ste24pQuickGO ontologyBLASTP
2359957236134213863-deoxy-D-arabinoheptulosonate-7-phosphate synthaseQuickGO ontologyBLASTP
23614222362354933bile acidsodium symporterQuickGO ontologyBLASTP