Pre_GI: BLASTP Hits

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Query: NC_009439:2337024:2350128 Pseudomonas mendocina ymp, complete genome

Start: 2350128, End: 2350364, Length: 237

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016147:1672482:168538116853811685623243Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehypothetical protein5e-1992.8
NC_007406:3354000:335579733557973356051255Nitrobacter winogradskyi Nb-255, complete genomehelix-turn-helix protein, CopG5e-0856.6
NC_009719:1135523:114928411492841149526243Parvibaculum lavamentivorans DS-1 chromosome, complete genomeCopG/Arc/MetJ family transcriptional regulator2e-0754.7
NC_011983:508287:515067515067515321255Agrobacterium radiobacter K84 chromosome 2, complete genomehypothetical protein3e-0650.8