Pre_GI: BLASTP Hits

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Query: NC_009439:2337024:2361422 Pseudomonas mendocina ymp, complete genome

Start: 2361422, End: 2362354, Length: 933

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016077:1278104:130054213005421301513972Acidaminococcus intestini RyC-MR95 chromosome, complete genomeBASS-family bile acid-sodium transporter6e-1891.7
NC_016077:113246:1314381314381324421005Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein5e-1375.5
NC_017512:642229:656712656712657704993Neisseria meningitidis WUE 2594, complete genomeSolute carrier family 10 member 6 Sodium-dependent organic anion transporter5e-1272
NC_003116:867943:885863885863886810948Neisseria meningitidis Z2491, complete genometransmembrane transport protein5e-1272
NC_003112:719490:736948736948737895948Neisseria meningitidis MC58, complete genometransporter7e-1271.6
NC_010120:662969:678396678396679343948Neisseria meningitidis 053442, complete genomebile acid:Na+ symporter, BASS family7e-1271.6
NC_014829:3305762:331953833195383320494957Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeBile acid:sodium symporter1e-1170.9
NC_006395:161455:178828178828179661834Haloarcula marismortui ATCC 43049 plasmid pNG700, completesodium-dependent transporter1e-1170.5
NC_013016:633313:648431648431649423993Neisseria meningitidis alpha14 chromosome, complete genomeputative transmembrane transport protein2e-1170.5
NC_017514:1520245:152024515202451521192948Neisseria meningitidis M01-240149 chromosome, complete genometransporter, bile acid/Na+ symporter family3e-1169.3
NC_017518:795113:813591813591814538948Neisseria meningitidis NZ-05/33 chromosome, complete genometransporter, bile acid/Na+ symporter family3e-1169.3
NC_017505:721395:739873739873740865993Neisseria meningitidis alpha710 chromosome, complete genomeputative transmembrane transport protein3e-1169.3
NC_009656:3733913:375192137519213752814894Pseudomonas aeruginosa PA7 chromosome, complete genomeputative transporter3e-1169.3
NC_017517:749031:768328768328769275948Neisseria meningitidis M01-240355 chromosome, complete genometransporter, bile acid/Na+ symporter family4e-1168.9
NC_017515:1555500:155554015555401556487948Neisseria meningitidis M04-240196 chromosome, complete genometransporter, bile acid/Na+ symporter family4e-1168.9
NC_018080:1730534:173334717333471734282936Pseudomonas aeruginosa DK2 chromosome, complete genometransporter8e-1167.8
NC_014532:3967463:397111939711193972069951Halomonas elongata DSM 2581, complete genomeK03453 bile acid:Na+ symporter, BASS family1e-1067.8
NC_017501:1633436:163630516363051637252948Neisseria meningitidis 8013, complete genomeputative transporter2e-1066.6
NC_016943:1956719:195671919567191957612894Blastococcus saxobsidens DD2, complete genomeputative transporter, bile acid/Na+ symporter family3e-1066.2
NC_012660:2045398:204779820477982048763966Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transporter-like membrane protein7e-1065.1
NC_007513:632884:632884632884633819936Synechococcus sp. CC9902, complete genomesodium/bile acid cotransporter family2e-0963.5
NC_014550:7560:127191271913690972Arthrobacter arilaitensis Re117, complete genomeputative sodium-dependent transporter4e-0858.9
NC_014650:2097900:211991621199162120875960Geobacillus sp. Y4.1MC1 chromosome, complete genomesodium symporter6e-0858.5
NC_019673:3726519:373944337394433740318876Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-0756.6