Pre_GI Gene

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Host: NC_008593 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008593:1917118 Clostridium novyi NT, complete genome

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
191711819182751158membrane spanning protein putativeQuickGO ontology
19182591919152894ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
19191491919529381transcriptional regulator gntR familyQuickGO ontologyBLASTP
19197391920677939Patatin-like phospholipaseQuickGO ontologyBLASTP
19211291921932804phosphomethylpyrimidine kinaseQuickGO ontologyBLASTP
19219611922758798hydroxyethylthiazole kinaseQuickGO ontologyBLASTP
19227491923363615thiamine-phosphate pyrophosphorylaseQuickGO ontologyBLASTP
19234131923580168hypothetical proteinBLASTP
192377919238951175S ribosomal RNAQuickGO ontologyBLASTP
19239311926835290523S ribosomal RNAQuickGO ontologyBLASTP
19243111924952642hypothetical proteinBLASTP
19270241928516149316S ribosomal RNAQuickGO ontologyBLASTP
19290151929794780hypothetical proteinBLASTP
19298691930819951anaerobic sulfite reductase subunit CQuickGO ontologyBLASTP
19308321931623792anaerobic sulfite reductase subunit BQuickGO ontologyBLASTP
193162319326241002anaerobic sulfite reductase subunit AQuickGO ontologyBLASTP
19327101933390681transcriptional regulator CrpFnr family include cyclic nucleotide-binding domainQuickGO ontologyBLASTP
193338419346851302glutamate-1-semialdehyde-21-aminomutaseQuickGO ontologyBLASTP
19346911935662972delta-aminolevulinic acid dehydrataseQuickGO ontologyBLASTP
193569319371861494uroporphyrinogen III synthasemethyltransferaseQuickGO ontologyBLASTP
19371881938090903porphobilinogen deaminaseQuickGO ontologyBLASTP
19381301938726597siroheme synthase putativeQuickGO ontologyBLASTP
193874119399761236glutamyl-tRNA reductaseQuickGO ontologyBLASTP
19400891941003915anaerobic sulfite reductase subunit CQuickGO ontologyBLASTP
194125619425601305NaH antiporter family proteinQuickGO ontologyBLASTP
19428041943256453hypothetical proteinBLASTP
194352619449651440ISBma2 transposaseQuickGO ontologyBLASTP
19452081945591384prephenate dehydratase putativeQuickGO ontologyBLASTP
19455991946033435prephenate dehydratase putativeQuickGO ontologyBLASTP
194623119463471175S ribosomal RNAQuickGO ontologyBLASTP
19463831949287290523S ribosomal RNAQuickGO ontologyBLASTP
19467631947404642hypothetical proteinBLASTP
19494761950968149316S ribosomal RNAQuickGO ontologyBLASTP
195143419530921659glutaminyl-tRNA synthetaseQuickGO ontologyBLASTP
19534401953586147prophage LambdaBa02 lipoprotein putativeQuickGO ontology
19537461954399654Butyrate-acetoacetate CoA-transferase subunit BQuickGO ontologyBLASTP
19544131955129717Acetate CoA-transferase alpha subunitQuickGO ontologyBLASTP
19556801956573894Integral membrane protein putativeQuickGO ontologyBLASTP
195661919579321314type I phosphodiesterasenucleotide pyrophosphatase family proteinQuickGO ontologyBLASTP
195812919597121584ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
195984819618482001translation elongation factor GQuickGO ontologyBLASTP
196191519652863372Zn-dependent peptidase insulinase family putativeQuickGO ontologyBLASTP