Pre_GI: BLASTP Hits

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Query: NC_008593:1917118:1955680 Clostridium novyi NT, complete genome

Start: 1955680, End: 1956573, Length: 894

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015425:2144639:218068521806852181578894Clostridium botulinum BKT015925 chromosome, complete genomeintegral membrane protein1e-119429
NC_021171:4588792:459100545910054591931927Bacillus sp. 1NLA3E, complete genomehypothetical protein2e-42172
NC_012225:1015452:101545210154521016309858Brachyspira hyodysenteriae WA1, complete genomehypothetical protein2e-29129
NC_014150:1006000:101636510163651017222858Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF6 transmembrane3e-28125
NC_012491:743883:745860745860746762903Brevibacillus brevis NBRC 100599, complete genomehypothetical protein1e-24114
NC_014614:2333890:233493423349342335860927Clostridium sticklandii, complete genomeconserved membrane protein of unknown function2e-23109
NC_013410:3358008:336252633625263363419894Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein4e-23108
NC_015589:2209011:222207522220752223019945Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehypothetical protein1e-1790.5
NC_015152:1230995:124803412480341248969936Spirochaeta sp. Buddy chromosome, complete genomehypothetical protein2e-1686.7
NC_013939:1812259:183215018321501833049900Deferribacter desulfuricans SSM1, complete genomedrug/metabolite transporter3e-1685.9
NC_002950:353549:367963367963368871909Porphyromonas gingivalis W83, complete genomehypothetical protein9e-1684.3
NC_010729:1818500:1822068182206818231411074Porphyromonas gingivalis ATCC 33277, complete genomeconserved hypothetical protein with integral membrane domain DUF69e-1684.3
NC_015571:1495286:150725115072511508159909Porphyromonas gingivalis TDC60, complete genomehypothetical protein1e-1584
NC_014624:3463272:346327234632723464213942Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-1274.3
NC_021182:1188000:119757811975781198474897Clostridium pasteurianum BC1, complete genomeDMT(drug/metabolite transporter) superfamily permease4e-1168.9
NC_014011:1760793:178574617857461786681936Aminobacterium colombiense DSM 12261 chromosome, complete genomeprotein of unknown function DUF6 transmembrane5e-1168.6
NC_019964:3028469:306100930610093061875867Halovivax ruber XH-70, complete genomeputative permease, DMT superfamily5e-1168.6
NC_020409:297258:300408300408301298891Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeconserved membrane protein of unknown function2e-1066.6
NC_012691:241404:264240264240265127888Tolumonas auensis DSM 9187, complete genomeprotein of unknown function DUF6 transmembrane5e-1065.1
NC_008255:1500067:151718115171811518089909Cytophaga hutchinsonii ATCC 33406, complete genomepermease, DMT superfamily5e-1065.1
NC_014844:2028666:204813120481312049021891Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehypothetical protein6e-1065.1
NC_002939:579087:602546602546603472927Geobacter sulfurreducens PCA, complete genomehypothetical protein2e-0963.2
NC_016629:3543432:354626335462633547159897Desulfovibrio africanus str. Walvis Bay chromosome, completehypothetical protein9e-0961.2
NC_004757:427483:431853431853432797945Nitrosomonas europaea ATCC 19718, complete genomeIntegral membrane protein, DUF62e-0860.5
NC_014758:245707:246976246976247845870Calditerrivibrio nitroreducens DSM 19672 chromosome, completehypothetical protein3e-0859.7
NC_012472:3503000:351821735182173519125909Bacillus cereus 03BB102, complete genometransporter, Drug/Metabolite Exporter family3e-0859.3
NC_008600:3488000:350325535032553504163909Bacillus thuringiensis str. Al Hakam, complete genometransporter, Drug/Metabolite Exporter family3e-0859.3
NC_003909:3432073:345005034500503450958909Bacillus cereus ATCC 10987, complete genomehypothetical protein6e-0858.5
NC_006274:3490598:350570035057003506608909Bacillus cereus E33L, complete genometransporter, drug/metabolite exporter family6e-0858.5
NC_011658:3438102:345609134560913456999909Bacillus cereus AH187 chromosome, complete genomedrug/metabolite exporter family transporter6e-0858.5
NC_011773:3496873:351530035153003516208909Bacillus cereus AH820 chromosome, complete genometransporter drug/metabolite exporter family6e-0858.5
NC_011969:3401916:341991234199123420820909Bacillus cereus Q1 chromosome, complete genometransporter, drug/metabolite exporter family6e-0858.5
NC_016771:3386660:340858934085893409497909Bacillus cereus NC7401, complete genomehypothetical protein6e-0858.5
NC_014624:3463272:346956834695683470440873Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein5e-0858.5
NC_005957:3488021:350314435031443504052909Bacillus thuringiensis serovar konkukian str. 97-27, completetransporter, Drug/Metabolite Exporter family5e-0858.5
NC_017200:3501500:351669535166953517603909Bacillus thuringiensis serovar finitimus YBT-020 chromosome,transporter, drug/metabolite exporter family protein1e-0757.8
NC_020244:516993:5406915406915417071017Bacillus subtilis XF-1, complete genomeputative permease1e-0757.4
NC_014335:3408081:342361234236123424520909Bacillus cereus biovar anthracis str. CI chromosome, completehypothetical protein2e-0756.6
NC_008312:409830:4134074134074151581752Trichodesmium erythraeum IMS101, complete genomeprotein of unknown function DUF6, transmembrane4e-0755.8
NC_009925:5957806:596125859612585962133876Acaryochloris marina MBIC11017, complete genomecarboxylate/amino acid/amine transporter, putative4e-0755.8
NC_012581:1075663:109223910922391093123885Bacillus anthracis str. CDC 684 chromosome, complete genometransporter, EamA family4e-0755.8
NC_014976:2735423:275201227520122752971960Bacillus subtilis BSn5 chromosome, complete genomeputative permease7e-0754.7
NC_019896:3491000:349572034957203496679960Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completetransport protein YdeD2e-0653.5
NC_005773:4539751:455323445532344554130897Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein3e-0652.8
NC_014976:2735423:274990927499092750793885Bacillus subtilis BSn5 chromosome, complete genomehypothetical protein3e-0652.8
NC_013926:1037681:105292810529281053776849Aciduliprofundum boonei T469 chromosome, complete genomeprotein of unknown function DUF6 transmembrane3e-0652.8
NC_013517:3846747:386155138615513862471921Sebaldella termitidis ATCC 33386, complete genomeprotein of unknown function DUF6 transmembrane4e-0652.4
NC_016584:593954:599018599018599914897Desulfosporosinus orientis DSM 765 chromosome, complete genomeDMT(drug/metabolite transporter) superfamily permease4e-0652.4
NC_007355:3979729:398258839825883983472885Methanosarcina barkeri str. fusaro chromosome 1, complete sequenceintegral membrane protein5e-0652
NC_019896:3491000:349789834978983498782885Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeMembrane protein YdzE5e-0652
NC_014924:2399524:2429846242984624308561011Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeprotein of unknown function DUF6 transmembrane7e-0651.6
NC_015557:278000:299144299144300025882Hydrogenobaculum sp. 3684 chromosome, complete genomeprotein of unknown function DUF6 transmembrane7e-0651.6
NC_015587:278000:299180299180300061882Hydrogenobaculum sp. SHO chromosome, complete genomeprotein of unknown function DUF6 transmembrane7e-0651.6
NC_020411:278000:299176299176300057882Hydrogenobaculum sp. HO, complete genomeDMT(drug/metabolite transporter) superfamily permease7e-0651.6
NC_014391:16188:2996029960309911032Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein6e-0651.6
NC_011772:3259483:327686232768623277746885Bacillus cereus G9842, complete genometransporter, EamA family6e-0651.6
NC_014761:1715377:172722317272231728095873Oceanithermus profundus DSM 14977 chromosome, complete genomehypothetical protein7e-0651.6