Pre_GI: BLASTP Hits

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Query: NC_016822:4686971:4689209 Shigella sonnei 53G, complete genome

Start: 4689209, End: 4689526, Length: 318

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:4395156:439739443973944397711318Escherichia coli IAI1 chromosome, complete genomeputative ribose-5-phosphate isomerase B (rpiB-like)3e-57219
CU928145:4695932:469817046981704698487318Escherichia coli 55989 chromosome, complete genomeputative ribose-5-phosphate isomerase B (rpiB-like)3e-57219
NC_007384:4530000:453228245322824532599318Shigella sonnei Ss046, complete genomeribose 5-phosphate isomerase B3e-57219
CP002185:4566150:457197345719734572290318Escherichia coli W, complete genome3e-57219
NC_007613:4156841:416266441626644162981318Shigella boydii Sb227, complete genomeribose 5-phosphate isomerase B3e-57219
NC_011748:4695932:469817046981704698487318Escherichia coli 55989, complete genomeputative ribose-5-phosphate isomerase B (rpiB-like)3e-57219
CU928160:4395156:439739443973944397711318Escherichia coli IAI1 chromosome, complete genomeputative ribose-5-phosphate isomerase B (rpiB-like)3e-57219
NC_011751:4795928:479970047997004800017318Escherichia coli UMN026 chromosome, complete genomeputative ribose-5-phosphate isomerase B6e-54209
NC_013364:5040268:504613050461305046408279Escherichia coli O111:H- str. 11128, complete genomehypothetical protein6e-49192
NC_009800:4332229:433813343381334338369237Escherichia coli HS, complete genomeribose-5-phosphate isomerase B, truncation3e-40163
NC_010498:4656716:465895946589594659408450Escherichia coli SMS-3-5, complete genomeribose 5-phosphate isomerase B6e-24109
NC_010468:4305105:432016243201624320611450Escherichia coli ATCC 8739, complete genomeribose 5-phosphate isomerase B6e-24109
AC_000091:4313167:431802843180284318477450Escherichia coli W3110 DNA, complete genomeribose 5-phosphate isomerase B/allose 6-phosphate isomerase6e-24109
NC_010473:4409492:441173544117354412184450Escherichia coli str. K-12 substr. DH10B, complete genomeribose 5-phosphate isomerase B/allose 6-phosphate isomerase6e-24109
NC_000913:4307471:431137343113734311822450Escherichia coli K12, complete genomeribose-5-phosphate isomerase B6e-24109
CP002516:4431235:444679944467994447248450Escherichia coli KO11, complete genomeribose 5-phosphate isomerase B6e-24109
NC_011415:4582388:458463245846324585081450Escherichia coli SE11 chromosome, complete genomeribose-5-phosphate isomerase B6e-24109
NC_012759:4247865:425010842501084250557450Escherichia coli BW2952 chromosome, complete genomeribose-5-phosphate isomerase B6e-24109
NC_012947:4106031:412148741214874121936450Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeribose-5-phosphate isomerase B6e-24109
NC_012967:4289929:429217242921724292621450Escherichia coli B str. REL606 chromosome, complete genomeribose-5-phosphate isomerase B6e-24109
NC_016902:4431235:444679944467994447248450Escherichia coli KO11FL chromosome, complete genomeribose 5-phosphate isomerase B6e-24109
NC_011750:4719477:472172147217214722170450Escherichia coli IAI39 chromosome, complete genomeribose-5-phosphate isomerase B6e-24109
NC_008253:4541915:454607545460754546524450Escherichia coli 536, complete genomeribose 5-phosphate isomerase B1e-23108
NC_004431:4867648:487250948725094872958450Escherichia coli CFT073, complete genomeribose-5-phosphate isomerase B2e-23107
NC_013353:5022196:502443950244395024888450Escherichia coli O103:H2 str. 12009, complete genomeribose-5-phosphate isomerase B7e-23105
AP010958:5022196:502443950244395024888450Escherichia coli O103:H2 str. 12009 DNA, complete genomeribose-5-phosphate isomerase B7e-23105
NC_011742:4569683:457454445745444574993450Escherichia coli S88 chromosome, complete genomeribose-5-phosphate isomerase B1e-22105
NC_008563:4656000:466001646600164660465450Escherichia coli APEC O1, complete genomeribose 5-phosphate isomerase B1e-22105
NC_012691:2146473:216232321623232162790468Tolumonas auensis DSM 9187, complete genomeribose 5-phosphate isomerase B5e-1166.6
NC_012225:1213421:121662312166231217129507Brachyspira hyodysenteriae WA1, complete genomeribose-5-phosphate isomerase B4e-1063.2
NC_018607:1505908:152773515277351528184450Brachyspira pilosicoli B2904 chromosome, complete genomeribose-5-phosphate isomerase B5e-1063.2
NC_014330:195447:197101197101197550450Brachyspira pilosicoli 95/1000 chromosome, complete genomeribose-5-phosphate isomerase B5e-1063.2
NC_017243:2383577:238490723849072385374468Brachyspira intermedia PWS/A chromosome, complete genomeribose-5-phosphate isomerase B1e-0962
NC_018604:1263927:128253512825351282984450Brachyspira pilosicoli WesB complete genomeribose-5-phosphate isomerase B3e-0960.5
NC_019970:2551607:256131625613162561762447Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeribose 5-phosphate isomerase B6e-0856.2
NC_009633:365325:377459377459377908450Alkaliphilus metalliredigens QYMF chromosome, complete genomeRpiB/LacA/LacB family sugar-phosphate isomerase7e-0855.8
NC_018704:2149229:215389921538992154345447Amphibacillus xylanus NBRC 15112, complete genomeribose-5-phosphate isomerase B7e-0855.8
NC_008435:604772:629414629414629776363Rhodopseudomonas palustris BisA53, complete genomeribose 5-phosphate isomerase B1e-0755.1
NC_015555:2259500:228946122894612289907447Thermoanaerobacterium xylanolyticum LX-11 chromosome, completesugar-phosphate isomerase, RpiB/LacA/LacB family2e-0754.3
NC_009922:2766397:277325527732552773704450Alkaliphilus oremlandii OhILAs, complete genomesugar-phosphate isomerase, RpiB/LacA/LacB family2e-0754.3