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Query: NC_016582:4983222:4992545 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4992545, End: 4993606, Length: 1062

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009380:581000:5870035870035884241422Salinispora tropica CNB-440 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1687
NC_009921:3098271:3107022310702231085811560Frankia sp. EAN1pec, complete genomehypothetical protein1e-1170.9
NC_008278:3025899:3033731303373130352031473Frankia alni ACN14a, complete genomehypothetical protein1e-0860.8
NC_019673:8799533:8816690881669088181051416Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein6e-0755.5
NC_015957:10505870:1052653510526535105280821548Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein9e-1788.2
NC_009921:3316962:3316962331696233185751614Frankia sp. EAN1pec, complete genomehypothetical protein3e-1583.2
NC_016109:4581467:4597653459765345989661314Kitasatospora setae KM-6054, complete genomehypothetical protein2e-0963.9
NC_019673:2051363:2073195207319520744391245Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-1584
NC_016111:3026000:3046858304685830483031446Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-0653.9
NC_013093:1213908:1229350122935012307561407Actinosynnema mirum DSM 43827, complete genomehypothetical protein4e-1065.9
NC_014666:1969602:1982851198285119840441194Frankia sp. EuI1c chromosome, complete genomeputative DNA-binding protein7e-0858.5
NC_007777:3000941:3001759300175930030631305Frankia sp. CcI3, complete genomeputative DNA-binding protein2e-0860.5
NC_007777:1018824:1036671103667110381821512Frankia sp. CcI3, complete genomeputative DNA-binding protein1e-0654.3
NC_016109:5768000:5797018579701857983521335Kitasatospora setae KM-6054, complete genomeputative transcriptional regulator1e-1274.3
NC_008278:1876435:1885541188554118869981458Frankia alni ACN14a, complete genomePutative transcriptional regulator7e-0858.5
NC_019673:8799533:8812614881261488140141401Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, XRE family3e-1273.2
NC_007777:4892150:4898272489827248997831512Frankia sp. CcI3, complete genomeTwin-arginine translocation pathway signal9e-1064.7
NC_014318:2252417:2277199227719922786411443Amycolatopsis mediterranei U32 chromosome, complete genomeXRE family transcriptional regulator2e-1273.9
NC_015957:527777:534873534873535841969Streptomyces violaceusniger Tu 4113 chromosome, complete genomeXRE family transcriptional regulator1e-1584.3
NC_017186:2252438:2277220227722022786621443Amycolatopsis mediterranei S699 chromosome, complete genomeXRE family transcriptional regulator2e-1273.9