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Query: NC_014169:1784435:1800006 Bifidobacterium longum subsp. longum JDM301 chromosome, complete

Start: 1800006, End: 1801034, Length: 1029

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014169:1784435:1795590179559017967861197Bifidobacterium longum subsp. longum JDM301 chromosome, completerestriction endonuclease S subunit4e-106384
NC_017221:535000:5462305462305474921263Bifidobacterium longum subsp. longum KACC 91563 chromosome,restriction endonuclease S subunit2e-102372
NC_014328:303063:3449343449343461871254Clostridium ljungdahlii ATCC 49587 chromosome, complete genometype I restriction enzyme, specificity subunit1e-53210
NC_008054:899441:9101449101449113791236Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeType I restriction-modification system, specificity subunit4e-46185
NC_011830:4187362:4191475419147541926951221Desulfitobacterium hafniense DCB-2, complete genomerestriction modification system DNA specificity domain protein2e-39163
NC_013037:6281164:6322095632209563233631269Dyadobacter fermentans DSM 18053, complete genomerestriction modification system DNA specificity domain1e-29130
NC_005139:796546:8174068174068187071302Vibrio vulnificus YJ016 chromosome I, complete sequencerestriction endonuclease S subunit3e-25116
NC_016026:1224129:1234454123445412357431290Micavibrio aeruginosavorus ARL-13 chromosome, complete genometype I restriction modification DNA specificity domain-containing protein2e-1996.7
NC_010581:2999002:3041441304144130426881248Beijerinckia indica subsp. indica ATCC 9039, complete genomerestriction modification system DNA specificity domain9e-1891.3
NC_009953:3224412:3233728323372832349661239Salinispora arenicola CNS-205 chromosome, complete genomerestriction endonuclease S subunits-like protein2e-1687.4
NC_014550:2562053:2590617259061725918701254Arthrobacter arilaitensis Re117, complete genometype I restriction-modification system specificity subunit3e-1686.3
NC_017338:436711:4382604382604394951236Staphylococcus aureus subsp. aureus JKD6159 chromosome, completetype I restriction modification system, site specificity determination subunit, HsdS_12e-1583.6
NC_014216:2334568:2339611233961123409301320Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomerestriction modification system DNA specificity domain protein5e-1479
NC_010816:2326453:233462423346242334881258Bifidobacterium longum DJO10A, complete genomeRestriction endonuclease S subunit2e-0963.9
NC_004307:2208591:221546622154662216035570Bifidobacterium longum NCC2705, complete genometruncated type I restriction system specificity protein2e-0963.9
NC_014616:1296287:1306098130609813073361239Bifidobacterium bifidum S17 chromosome, complete genomeHsdS-like protein of Type I restriction-modification system2e-0860.1
NC_014727:995480:1006396100639610075681173Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,type-i specificity determinant subunit6e-0755.5