Some Help

Query: NC_013552:1187299 Dehalococcoides sp. VS, complete genome

Start: 1187299, End: 1234599, Length: 47301

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: Isolation: Texas; Country: USA; Temp: Mesophile; Habitat: Fresh water, Groundwater. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_020387:12571631257163129252735365Dehalococcoides mccartyi BTF08, complete genome034230BLASTN svgBLASTP svg
NC_013890:11425001142500117062628127Dehalococcoides sp. GT chromosome, complete genome019350BLASTN svgBLASTP svg
NC_007356:1165760*1165760121147545716Dehalococcoides sp. CBDB1, complete genome04742BLASTN svgBLASTP svg
NC_013552:680036800310309935097Dehalococcoides sp. VS, complete genome02399BLASTN svgBLASTP svg
NC_020387:745353*74535376435118999Dehalococcoides mccartyi BTF08, complete genome02319BLASTN svgBLASTP svg
NC_013890:10380710380712349519689Dehalococcoides sp. GT chromosome, complete genome02313BLASTN svgBLASTP svg
NC_013552:12400731240073126353423462Dehalococcoides sp. VS, complete genome5e-37165BLASTN svgBLASTP svg
NC_007356:12215001221500125000228503Dehalococcoides sp. CBDB1, complete genome6e-1591.7BLASTN svgBLASTP svg
NC_007356:51080*5108010028549206Dehalococcoides sp. CBDB1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_002936:67896678969490227007Dehalococcoides ethenogenes 195, complete genome2e-0869.9BLASTN svgBLASTP svg