Query: NC_013410:1591500 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,
Start: 1591500, End: 1624900, Length: 33401
Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria
General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_013124:1439915* | 1439915 | 1466705 | 26791 | Acidimicrobium ferrooxidans DSM 10331, complete genome | 3e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_008752:166877 | 166877 | 188114 | 21238 | Acidovorax avenae subsp. citrulli AAC00-1, complete genome | 5e-21 | 111 | BLASTN svg | BLASTP svg |
NC_010655:1808657* | 1808657 | 1827803 | 19147 | Akkermansia muciniphila ATCC BAA-835, complete genome | 2e-20 | 109 | BLASTN svg | BLASTP svg |
NC_014218:882118 | 882118 | 908724 | 26607 | Arcanobacterium haemolyticum DSM 20595 chromosome, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_002927:960369* | 960369 | 991599 | 31231 | Bordetella bronchiseptica RB50, complete genome | 2e-23 | 119 | BLASTN svg | BLASTP svg |
NC_010170:4463000 | 4463000 | 4511769 | 48770 | Bordetella petrii, complete genome | 5e-18 | 101 | BLASTN svg | BLASTP svg |
NC_010170:4409683 | 4409683 | 4435297 | 25615 | Bordetella petrii, complete genome | 3e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_010831:1224000 | 1224000 | 1253177 | 29178 | Chlorobium phaeobacteroides BS1, complete genome | 6e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_002936:1004570 | 1004570 | 1023262 | 18693 | Dehalococcoides ethenogenes 195, complete genome | 2e-42 | 182 | BLASTN svg | BLASTP svg |
NC_010002:4572573* | 4572573 | 4618583 | 46011 | Delftia acidovorans SPH-1, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_021184:1484352* | 1484352 | 1521099 | 36748 | Desulfotomaculum gibsoniae DSM 7213, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_013204:989103 | 989103 | 1012099 | 22997 | Eggerthella lenta DSM 2243, complete genome | 1e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_020207:559310 | 559310 | 582099 | 22790 | Enterococcus faecium NRRL B-2354, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_004431:5123325 | 5123325 | 5149090 | 25766 | Escherichia coli CFT073, complete genome | 3e-19 | 105 | BLASTN svg | BLASTP svg |
NC_014828:2038692 | 2038692 | 2087315 | 48624 | Ethanoligenens harbinense YUAN-3 chromosome, complete genome | 3e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_014915:1331459* | 1331459 | 1355606 | 24148 | Geobacillus sp. Y412MC52 chromosome, complete genome | 3e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_013411:2191514* | 2191514 | 2215662 | 24149 | Geobacillus sp. Y412MC61, complete genome | 3e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_008497:1575884* | 1575884 | 1599460 | 23577 | Lactobacillus brevis ATCC 367, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_008054:1030994* | 1030994 | 1061519 | 30526 | Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete | 7e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_011666:2109274* | 2109274 | 2139111 | 29838 | Methylocella silvestris BL2, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_015635:3860570* | 3860570 | 3891855 | 31286 | Microlunatus phosphovorus NM-1, complete genome | 3e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_008609:206313 | 206313 | 246721 | 40409 | Pelobacter propionicus DSM 2379, complete genome | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_009434:3434381* | 3434381 | 3464115 | 29735 | Pseudomonas stutzeri A1501, complete genome | 1e-24 | 123 | BLASTN svg | BLASTP svg |
NC_019897:73957 | 73957 | 127495 | 53539 | Thermobacillus composti KWC4 chromosome, complete genome | 6e-08 | 67.9 | BLASTN svg | BLASTP svg |