Pre_GI: BLASTP Hits

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Query: NC_011147:2676972:2687426 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2687426, End: 2687653, Length: 228

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016810:2871689:288448528844852884712228Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein2e-1787.8
NC_016860:2896254:289710828971082897335228Salmonella enterica subsp. enterica serovar Typhimurium strC4-type zinc finger protein, DksA/TraR family1e-29128
NC_011149:2802199:281653628165362816763228Salmonella enterica subsp. enterica serovar Agona str. SL483,C4-type zinc finger protein, DksA/TraR family1e-29128
NC_013956:3525711:354118635411863541413228Pantoea ananatis LMG 20103 chromosome, complete genomeCP809e-1475.5
NC_011205:2938356:295172829517282951955228Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853DksA/TraR family protein1e-29128
NC_011742:2823000:282714028271402827367228Escherichia coli S88 chromosome, complete genomeDksA/TraR protein family with a zinc finger1e-24111
NC_003198:4453457:450366745036674503894228Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-30128
NC_003197:2870268:287354228735422873769228Salmonella typhimurium LT2, complete genomehypothetical protein1e-29128
NC_016845:4046142:405365340536534053880228Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein7e-1579.3
NC_020260:312805:321303321303321530228Cronobacter sakazakii Sp291, complete genomehypothetical protein2e-28124
NC_014306:1244721:125134012513401251567228Erwinia billingiae Eb661, complete genomehypothetical protein9e-0855.5
NC_006511:2677964:269189026918902692117228Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein9e-30128
NC_020181:5182568:519321951932195193440222Enterobacter aerogenes EA1509E, complete genomeHypothetical Zinc-finger containing protein9e-1268.9
NC_015061:596247:614243614243614467225Rahnella sp. Y9602 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family3e-0960.5
NC_017047:4037674:404784940478494048073225Rahnella aquatilis HX2 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family1e-0858.5
NC_009648:3803622:383141638314163831637222Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage protein2e-1374.7
NC_012917:3565268:357993435799343580158225Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, TraR/DksA family6e-1062.8
NC_011601:846358:858374858374858601228Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeTraR/DksA family transcriptional regulator1e-25114
NC_009436:3807420:381093238109323811153222Enterobacter sp. 638, complete genomeTraR/DksA family transcriptional regulator3e-1373.6
NC_014837:2458780:247245224724522472676225Pantoea sp. At-9b chromosome, complete genomeTraR/DksA family transcriptional regulator1e-1065.5
NC_009436:1466580:147985914798591480086228Enterobacter sp. 638, complete genomeTraR/DksA family transcriptional regulator3e-22103
NC_014837:3766426:378008137800813780308228Pantoea sp. At-9b chromosome, complete genomeTraR/DksA family transcriptional regulator3e-1167
NC_013282:3389619:340304934030493403273225Cronobacter turicensis, complete genomeUncharacterized 8.5 kDa protein in gpA 5'region3e-1684