Pre_GI Gene

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Host: NC_011205 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011205:2938356 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a bovine-adapted serovar that is genetically related to S. Enteritidis that lives in the bovine intestinal tract and can causes disease in humans. While rare in incidence, S. dublin infection classically produces a syndrome of sustained bacteremia with fever, resulting in high morbidity and mortality. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
29383562938820465phage head completion proteinQuickGO ontologyBLASTP
29389162939566651terminase endonuclease subunitQuickGO ontologyBLASTP
293957029406281059phage major capsid protein P2 familyQuickGO ontologyBLASTP
29406452941478834phage capsid scaffolding proteinQuickGO ontologyBLASTP
294162129433871767terminase ATPase subunitQuickGO ontologyBLASTP
294338729444181032phage portal protein pbsx familyQuickGO ontologyBLASTP
29444152945194780hypothetical protein
294519929463591161hypothetical proteinBLASTP
29467802947658879lipoproteinQuickGO ontologyBLASTP
29477962947915120hypothetical protein
29481372948325189hypothetical proteinBLASTP
294848129508772397bacteriophage replication gene AQuickGO ontologyBLASTP
29508742951731858retron adenine methylaseQuickGO ontologyBLASTP
29517282951955228DksATraR family proteinQuickGO ontologyBLASTP
29519552952188234hypothetical proteinBLASTP
29522562952597342hypothetical proteinBLASTP
29529102953275366hypothetical proteinBLASTP
29540102954249240phage regulatory proteinQuickGO ontologyBLASTP
29545942954998405phage repressor protein cIQuickGO ontologyBLASTP
295500229560271026phage integraseQuickGO ontologyBLASTP
29572792958082804hypothetical proteinBLASTP
29588782959501624transposase BQuickGO ontologyBLASTP