Pre_GI: BLASTP Hits

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Query: NC_011147:2536000:2548900 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2548900, End: 2549610, Length: 711

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2540500:255336425533642554074711Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative fimbrial protein3e-139494
NC_011094:334267:352648352648353358711Salmonella enterica subsp. enterica serovar Schwarzengrund strfimbrial protein3e-138490
NC_006905:326517:346343346343347053711Salmonella enterica subsp. enterica serovar Choleraesuis strputative fimbrial protein8e-137486
NC_016832:2612809:262554026255402626250711Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein9e-137485
NC_003198:331314:351764351764352474711Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative fimbrial protein9e-137485
NC_004631:2615908:262863926286392629349711Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative fimbrial protein9e-137485
NC_011083:338910:350370350370351080711Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative fimbrial protein2e-136484
NC_016835:405482:418827418827419549723Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,P pilus assembly protein, chaperone PapD5e-33140
NC_020181:1317647:132364913236491324398750Enterobacter aerogenes EA1509E, complete genomeAlpha-fimbriae chaperone protein8e-32137
NC_015061:3801927:382109838210983821841744Rahnella sp. Y9602 chromosome, complete genomehypothetical protein2e-28125
NC_016818:3816000:383267438326743833417744Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeP pilus assembly protein, chaperone PapD3e-26118
NC_009788:16360:351103511035826717Escherichia coli E24377A plasmid pETEC_73, complete sequencehypothetical protein4e-24111
NC_005773:866157:910262910262910975714Pseudomonas syringae pv. phaseolicola 1448A, complete genomeperiplasmic chaperone protein, putative5e-24111
NC_017047:3869350:388874738887473889232486Rahnella aquatilis HX2 chromosome, complete genomeputative fimbrial protein TcfA9e-2097.1
NC_014541:1414627:142800214280021428643642Ferrimonas balearica DSM 9799 chromosome, complete genomeputative CFA/I fimbrial subunit A1e-1273.2
NC_015224:279037:288173288173288820648Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein2e-0652.8
NC_015224:279037:288792288792289475684Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein3e-0652.4