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Query: NC_011147:2496808:2507056 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2507056, End: 2507397, Length: 342

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:251152025115202511861342Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-63239
NC_016860:364981:384147384147384488342Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-62236
NC_011742:1177946:119570411957041196087384Escherichia coli S88 chromosome, complete genomehypothetical protein4e-60229
NC_008563:1175035:119218211921821192565384Escherichia coli APEC O1, complete genomehypothetical protein4e-60229
NC_007946:1239278:125483712548371255178342Escherichia coli UTI89, complete genomehypothetical protein4e-60229
NC_004431:1401681:141830214183021418643342Escherichia coli CFT073, complete genomehypothetical protein4e-60229
NC_011751:1405381:142370214237021424085384Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-59228
NC_011083:374000:390373390373390705333Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,NinX1e-28124
NC_014121:3627588:366316736631673663535369Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein9e-1579
NC_011601:2614691:261469126146912615050360Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeNinX7e-1372.4
NC_009800:289000:306098306098306457360Escherichia coli HS, complete genomeputative protein ninX1e-1168.6
NC_007946:2625461:262546126254612625808348Escherichia coli UTI89, complete genomehypothetical protein2e-1168.2
NC_009778:2993218:300969230096923010012321Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein8e-1062.4
NC_011740:2072173:210481821048182105237420Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein, putative protein ninX from phage origin1e-0755.1
NC_004838:51013:992659926599636372Yersinia pestis KIM plasmid pMT-1, complete sequencehypothetical protein3e-0753.9