Pre_GI: BLASTP Hits

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Query: NC_011147:2463299:2468594 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2468594, End: 2469235, Length: 642

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:373630:385705385705386346642Salmonella enterica subsp. enterica serovar Paratyphi C strainresponse regulator6e-119426
NC_010102:2721374:272673727267372727378642Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-119426
NC_016831:2627515:263287826328782633519642Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transcriptional regulator1e-118424
NC_011274:376970:389044389044389685642Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator1e-118424
NC_011083:403022:438183438183438824642Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative response regulator1e-118424
NC_011149:361765:373853373853374494642Salmonella enterica subsp. enterica serovar Agona str. SL483,putative response regulator1e-118424
NC_011080:383441:395516395516396157642Salmonella enterica subsp. enterica serovar Newport str. SL254,putative response regulator2e-118424
NC_004631:2584244:258953825895382590065528Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transcriptionl regulator4e-96350
NC_006511:2467763:247305824730582473585528Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible transcriptionl regulator4e-96350
NC_003198:378844:391048391048391575528Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transcriptionl regulator4e-96350
NC_016832:2581145:258643925864392586885447Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transcriptionl regulator3e-84310
NC_020064:3998715:404193840419384042582645Serratia marcescens FGI94, complete genomeDNA-binding protein with HTH domain6e-1787.4
NC_006625:1:107011070111333633Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceputative response regulator2e-1272.8
NC_012731:3411161:344578434457843446416633Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeregulator of mucoid phenotype4e-1271.2