Query: NC_011080:383441 Salmonella enterica subsp. enterica serovar Newport str. SL254,
Start: 383441, End: 406099, Length: 22659
Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_011083:403022 | 403022 | 450268 | 47247 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, | 0 | 42900 | BLASTN svg | BLASTP svg |
NC_011149:361765 | 361765 | 384599 | 22835 | Salmonella enterica subsp. enterica serovar Agona str. SL483, | 0 | 42510 | BLASTN svg | BLASTP svg |
NC_010102:2721374 | 2721374 | 2744668 | 23295 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, | 0 | 34220 | BLASTN svg | BLASTP svg |
NC_006511:2467763 | 2467763 | 2491580 | 23818 | Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC | 0 | 25690 | BLASTN svg | BLASTP svg |
NC_003198:378844 | 378844 | 402752 | 23909 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 0 | 25220 | BLASTN svg | BLASTP svg |
NC_004631:2584244* | 2584244 | 2605599 | 21356 | Salmonella enterica subsp. enterica serovar Typhi Ty2, complete | 0 | 25210 | BLASTN svg | BLASTP svg |
NC_006905:401154 | 401154 | 431349 | 30196 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 0 | 14750 | BLASTN svg | BLASTP svg |
NC_003197:367430 | 367430 | 386609 | 19180 | Salmonella typhimurium LT2, complete genome | 0 | 14270 | BLASTN svg | BLASTP svg |
NC_006905:1961774* | 1961774 | 1984099 | 22326 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 0 | 684 | BLASTN svg | BLASTP svg |
NC_010067:2488141 | 2488141 | 2519373 | 31233 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 1e-119 | 438 | BLASTN svg | BLASTP svg |
NC_011992:1179084* | 1179084 | 1203830 | 24747 | Acidovorax ebreus TPSY, complete genome | 3e-86 | 327 | BLASTN svg | BLASTP svg |
NC_011770:2804218 | 2804218 | 2828838 | 24621 | Pseudomonas aeruginosa LESB58, complete genome | 3e-86 | 327 | BLASTN svg | BLASTP svg |
NC_011992:1213726 | 1213726 | 1232798 | 19073 | Acidovorax ebreus TPSY, complete genome | 2e-84 | 321 | BLASTN svg | BLASTP svg |
NC_009648:293052* | 293052 | 326747 | 33696 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome | 5e-26 | 127 | BLASTN svg | BLASTP svg |
NC_011887:72364 | 72364 | 97355 | 24992 | Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_008750:1253354 | 1253354 | 1283210 | 29857 | Shewanella sp. W3-18-1, complete genome | 5e-20 | 107 | BLASTN svg | BLASTP svg |
NC_013716:3109700 | 3109700 | 3149905 | 40206 | Citrobacter rodentium ICC168, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_008027:2397255 | 2397255 | 2421256 | 24002 | Pseudomonas entomophila L48, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_015062:58826 | 58826 | 83281 | 24456 | Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_020063:2343813 | 2343813 | 2366099 | 22287 | Enterobacteriaceae bacterium strain FGI 57, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_014562:1402863 | 1402863 | 1421996 | 19134 | Pantoea vagans C9-1 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_008344:49039* | 49039 | 134599 | 85561 | Nitrosomonas eutropha C91, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_013856:692000 | 692000 | 719900 | 27901 | Azospirillum sp. B510 plasmid pAB510b, complete sequence | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_018868:619113 | 619113 | 670071 | 50959 | Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010688:3229820 | 3229820 | 3272219 | 42400 | Xanthomonas campestris pv. campestris, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010170:4739925 | 4739925 | 4769552 | 29628 | Bordetella petrii, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015663:3586836* | 3586836 | 3610308 | 23473 | Enterobacter aerogenes KCTC 2190 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_015424:3112637* | 3112637 | 3180033 | 67397 | Aeromonas veronii B565 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |