Pre_GI: BLASTP Hits

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Query: NC_011080:333121:344281 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 344281, End: 344457, Length: 177

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:332060:340428340428340676249Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein2e-28124
NC_017046:329847:339930339930340121192Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein5e-28122
NC_016860:332087:340455340455340646192Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein5e-28122
NC_011205:329155:344014344014344256243Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-25114
NC_006905:326517:335030335030335344315Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein3e-24110
NC_012125:326909:334900334900335142243Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein4e-24109
NC_006511:2540500:256570325657032566017315Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-23108
NC_003198:331314:339851339851340156306Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-22103
NC_016832:2612809:263792926379292638162234Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-22103
NC_011205:329155:337601337601337810210Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein5e-1993.2
NC_016514:506611:530199530199530657459Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein1e-1892
NC_014121:677799:696780696780697235456Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-1892
NC_015968:511282:528718528718529191474Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein1e-1891.7
NC_016857:329849:339932339932340045114Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein3e-1580.9
NC_011149:309556:321823321823321936114Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-1580.9
NC_011094:334267:341337341337341516180Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-1271.6
NC_013716:3109700:312146731214673121664198Citrobacter rodentium ICC168, complete genomehypothetical protein5e-1063.2
NC_013592:2160000:217890621789062179175270Dickeya dadantii Ech586, complete genomehypothetical protein7e-1062.8
NC_012912:2285778:230357823035782303790213Dickeya zeae Ech1591, complete genomeDomain of unknown function DUF1813 HSP20-like protein8e-1062.4
NC_012912:2174183:219338421933842193671288Dickeya zeae Ech1591, complete genomeDomain of unknown function DUF1813 HSP20-like protein1e-0961.6
NC_013592:2160000:217623521762352176441207Dickeya dadantii Ech586, complete genomeDomain of unknown function DUF1813 HSP20-like protein4e-0960.5
NC_004547:3817656:382111538211153821444330Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein5e-0960.1
NC_004547:3817656:382804538280453828374330Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein5e-0960.1
NC_015663:1869000:190067619006761900858183Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein6e-0856.2