Pre_GI: BLASTP Hits

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Query: NC_011080:2982346:3026715 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 3026715, End: 3027383, Length: 669

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:2867766:291049129104912911159669Salmonella enterica subsp. enterica serovar Gallinarum/pullorummembrane protein1e-118425
NC_011294:2919906:293322729332272933895669Salmonella enterica subsp. enterica serovar Enteritidis strmembrane protein1e-118425
NC_011274:2909799:292403129240312924699669Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-118425
NC_011205:3078732:309295830929583093626669Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-118425
NC_011149:2912219:295862329586232959291669Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein1e-118425
NC_010102:2967464:301318630131863013854669Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-118424
NC_012125:2938519:298247629824762983144669Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein6e-117419
NC_006905:2987863:300209430020943002762669Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein6e-117419
NC_014931:4210029:421002942100294210748720Variovorax paradoxus EPS chromosome, complete genomehypothetical protein1e-1169.7