Pre_GI: BLASTP Hits

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Query: NC_011080:1750000:1759609 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1759609, End: 1760205, Length: 597

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:1709578:171999317199931720793801Salmonella enterica subsp. enterica serovar Typhimurium str. 798lipoprotein4e-95347
NC_016863:1711832:172142617214261722271846Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative lipoprotein5e-95346
NC_016860:1752000:176094817609481761793846Salmonella enterica subsp. enterica serovar Typhimurium strputative lipoprotein5e-95346
NC_016857:1709695:172011017201101720955846Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative lipoprotein5e-95346
NC_016856:1763640:177323417732341774079846Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative lipoprotein5e-95346
NC_016810:1709695:172011017201101720955846Salmonella enterica subsp. enterica serovar Typhimurium strputative lipoprotein5e-95346
NC_003197:1753663:176325717632571764102846Salmonella typhimurium LT2, complete genomeputative lipoprotein5e-95346
NC_011094:1726000:173643317364331737278846Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-94345
NC_006905:1766000:177638417763841777229846Salmonella enterica subsp. enterica serovar Choleraesuis strputative serine/threonine protein kinase9e-95345
NC_006511:1273162:128266512826651283510846Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative lipoprotein8e-95345
NC_011147:1267005:127650812765081277353846Salmonella enterica subsp. enterica serovar Paratyphi A strlipoprotein8e-95345
NC_004631:1623511:163392916339291634774846Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative lipoprotein3e-93340
NC_003198:1336894:134640813464081347253846Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative lipoprotein3e-93340
NC_011149:1429523:143903314390331439878846Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein5e-91333
NC_011740:1595381:160504116050411605910870Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein, putative exported protein2e-1789