Pre_GI: BLASTP Hits

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Query: NC_010102:1979742:1996300 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 1996300, End: 1996431, Length: 132

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011080:1209935:121395812139581214089132Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-1787.4
NC_011205:1186097:119012011901201190251132Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-1684.7
NC_006905:1186895:119091811909181191049132Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein2e-1684.7
NC_011149:1077589:108161210816121081743132Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-1684.7
NC_011094:1166271:117029411702941170425132Salmonella enterica subsp. enterica serovar Schwarzengrund str8e-1682.4
NC_016832:1838220:185582218558221855950129Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-1580.1