Pre_GI: BLASTP Hits

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Query: NC_009439:574437:574676 Pseudomonas mendocina ymp, complete genome

Start: 574676, End: 575476, Length: 801

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:617020:617020617020617784765Pseudomonas mendocina NK-01 chromosome, complete genomenuclease7e-117419
NC_009434:608765:6111096111096122091101Pseudomonas stutzeri A1501, complete genomestaphylococcal nuclease8e-82303
NC_015740:636667:639317639317640111795Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completenuclease1e-80300
NC_012438:192065:198467198467198997531Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomethermonuclease1e-1377.4
NC_010379:73718:907459074591416672Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequencethermonuclease (TNase) (Micrococcal nuclease)(Staphylococcal nuclease)9e-1270.9
NC_008148:2053467:207091520709152071490576Rubrobacter xylanophilus DSM 9941, complete genomenuclease (SNase-like)2e-1066.2
NC_017191:1173989:118155611815561182536981Bacillus amyloliquefaciens XH7 chromosome, complete genomeDNase/RNase endonuclease3e-1065.9
NC_017188:1172181:117997911799791180959981Bacillus amyloliquefaciens TA208 chromosome, complete genomethermonuclease3e-1065.9
NC_016047:1978312:199667619966761997377702Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completethermonuclease3e-1065.5
NC_014551:1872000:188027118802711881236966Bacillus amyloliquefaciens DSM 7, complete genomethermonuclease precursor4e-1065.1
NC_017195:1852935:187656318765631877201639Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completethermonuclease4e-1065.1
NC_020244:1875834:190126919012691901904636Bacillus subtilis XF-1, complete genomeDNA nuclease, lipoprotein5e-1065.1
NC_014479:1831404:185024218502421850685444Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeSPbeta phage DNA nuclease, lipoprotein6e-1064.7
NC_000964:1873398:189458618945861895221636Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein7e-1064.7
NC_019896:2158223:217364121736412174276636Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein8e-1064.3
NC_017190:2130651:227652522765252277508984Bacillus amyloliquefaciens LL3 chromosome, complete genomethermonuclease8e-1064.3
NC_014976:17909:213822138222017636Bacillus subtilis BSn5 chromosome, complete genomeDNA nuclease, lipoprotein1e-0963.9
NC_013062:1141865:115541311554131156111699Flavobacteriaceae bacterium 3519-10, complete genomeprophage LambdaCh01, nuclease domain protein1e-0963.5
NC_019842:2134803:214968321496832150648966Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,micrococcal nuclease1e-0963.5
UCMB5137:2054735:206663720666372067335699Bacillus atrophaeus UCMB-5137hypothetical protein2e-0963.5
NC_020410:2068500:208447120844712085436966Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeSPBc2 prophage-derived endonuclease yokF2e-0963.2
NC_012440:585568:594696594696595274579Persephonella marina EX-H1, complete genomethermonuclease (TNase) (Micrococcal nuclease)(Staphylococcal nuclease)5e-0858.5
NC_014248:943198:944286944286944879594Nostoc azollae 0708 chromosome, complete genomenuclease9e-0857.4
NC_010424:825117:827685827685828668984Candidatus Desulforudis audaxviator MP104C, complete genomenuclease (SNase domain protein)2e-0756.6
NC_011295:33500:432104321044091882Coprothermobacter proteolyticus DSM 5265, complete genomeprophage LambdaCh01, nuclease domain protein3e-0755.8
NC_013526:911909:922406922406923182777Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeMicrococcal nuclease5e-0755.1
NC_013205:19295:2513025130262481119Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,nuclease (SNase domain protein)7e-0754.7
NC_012918:2758775:279392827939282794467540Geobacter sp. M21 chromosome, complete genomenuclease8e-0754.3
NC_010003:1242846:126124612612461262094849Petrotoga mobilis SJ95, complete genomenuclease (SNase domain protein)8e-0754.3
NC_012491:3704000:371231537123153713247933Brevibacillus brevis NBRC 100599, complete genomeputative nuclease precursor2e-0653.1
NC_005070:1486496:152121015212101521866657Synechococcus sp. WH 8102, complete genomeStaphylococcal nuclease homologue3e-0652.8
NC_007604:2213659:222852922285292229017489Synechococcus elongatus PCC 7942, complete genomenuclease (SNase-like)3e-0652.4