Pre_GI: BLASTP Hits

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Query: NC_006511:2540500:2566054 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 2566054, End: 2566362, Length: 309

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:329847:339520339520339828309Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein6e-48189
NC_016863:332060:340018340018340326309Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein6e-48189
NC_016857:329849:339522339522339830309Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein6e-48189
NC_016856:332771:340729340729341037309Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein6e-48189
NC_016810:329849:339522339522339830309Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein6e-48189
NC_003197:332086:340044340044340352309Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein6e-48189
NC_006905:326517:334610334610334963354Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein4e-47186
NC_012125:326909:334555334555334833279Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein7e-47185
NC_011294:311796:319584319584319862279Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein4e-44176
NC_011274:311843:338387338387338665279Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-43173
NC_016860:332087:340102340102340353252Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein4e-39159
NC_016831:2667561:268392726839272684148222Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity island protein2e-35147
NC_011205:329155:343726343726343947222Salmonella enterica subsp. enterica serovar Dublin str. CT_020218532e-35147
NC_011080:333121:343928343928344149222Salmonella enterica subsp. enterica serovar Newport str. SL254,6e-35145
NC_011149:309556:321470321470321691222Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-34144