Pre_GI: BLASTP Hits

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Query: NC_004631:948054:980637 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 980637, End: 980726, Length: 90

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:1902431:19108871910887191097690Escherichia coli KO11FL chromosome, complete genometRNA-Ser1e-0858.2
CP002516:1902431:19108871910887191097690Escherichia coli KO11, complete genometRNA-Ser1e-0858.2
CU928160:2091249:21051732105173210526290Escherichia coli IAI1 chromosome, complete genometRNA-Ser1e-0858.2
NC_021066:601029:61412761412761421690Raoultella ornithinolytica B6, complete genometRNA-Ser1e-0858.2
NC_014500:1862000:19073231907323190741290Dickeya dadantii 3937 chromosome, complete genometRNA-Ser1e-0858.2
NC_000913:2028472:20414922041492204158190Escherichia coli K12, complete genometRNA-Ser1e-0858.2
NC_020211:3398281:34157103415710341579990Serratia marcescens WW4, complete genometRNA-Ser1e-0858.2
NC_015663:4906652:49223324922332492242190Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA-Ser1e-0858.2
AC_000091:2027648:20456052045605204569490Escherichia coli W3110 DNA, complete genometRNA-Ser1e-0858.2
NC_004431:2185750:22168412216841221693090Escherichia coli CFT073, complete genometRNA-Ser1e-0858.2
NC_011740:1991941:20009692000969200105890Escherichia fergusonii ATCC 35469, complete genometRNA-Ser1e-0858.2
NC_012912:2901021:29166742916674291676390Dickeya zeae Ech1591, complete genometRNA-Ser1e-0858.2
NC_010473:2119480:21325002132500213258990Escherichia coli str. K-12 substr. DH10B, complete genometRNA-Ser1e-0858.2
NC_016832:948029:97831297831297840190Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Ser1e-0858.2
NC_016822:2201388:22200542220054222014390Shigella sonnei 53G, complete genometRNA-Ser1e-0858.2
NC_016612:5208936:52197725219772521986190Klebsiella oxytoca KCTC 1686 chromosome, complete genometRNA-Ser1e-0858.2
NC_012967:1967675:19814671981467198155690Escherichia coli B str. REL606 chromosome, complete genometRNA-Ser1e-0858.2
NC_012947:1769438:17911041791104179119390Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetRNA-Ser1e-0858.2
NC_012759:1920955:19339751933975193406490Escherichia coli BW2952 chromosome, complete genometRNA-Ser1e-0858.2
NC_011741:2091249:21051732105173210526290Escherichia coli IAI1 chromosome, complete genometRNA-Ser1e-0858.2
NC_008253:1938975:19700001970000197008990Escherichia coli 536, complete genometRNA-Ser1e-0858.2
CP002185:2181936:21948792194879219496890Escherichia coli W, complete genometRNA-Ser1e-0858.2
NC_013716:2139952:21642342164234216432087Citrobacter rodentium ICC168, complete genometRNA-Ser5e-0856.2
NC_010067:892729:91522991522991531587Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completetRNA-Ser5e-0856.2
NC_011274:2044000:20502892050289205037587Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91tRNA-Ser5e-0856.2
NC_016831:947281:98416598416598425187Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtRNA-Ser5e-0856.2
NC_013421:1696746:17172461717246171733590Pectobacterium wasabiae WPP163, complete genometRNA-Ser5e-0753.1
NC_015761:1970042:19843501984350198443687Salmonella bongori NCTC 12419, complete genometRNA-Ser5e-0753.1