Pre_GI: BLASTP Hits

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Query: NC_004631:2872192:2886117 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 2886117, End: 2886443, Length: 327

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:2856596:290026029002602900586327Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-56218
NC_011147:2814664:285833828583382858664327Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-55214
NC_006511:2819128:286280228628022863128327Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-55214
NC_011274:2909799:292527329252732925683411Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-53208
NC_011294:2919906:293446929344692934879411Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-53208
NC_006905:2987863:300333730033373003747411Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein7e-54208
NC_010102:2967464:301442930144293014839411Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-54208
NC_012125:2938519:298371929837192984129411Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein7e-54208
NC_003197:3005842:304959930495993050120522Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein6e-53205
NC_016810:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein6e-53205
NC_016856:3026426:306983630698363070357522Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein6e-53205
NC_016857:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein6e-53205
NC_016863:2974333:301808930180893018610522Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein6e-53205
NC_011094:2913500:295493629549362955457522Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein9e-52201
NC_009801:3013838:3031348303134830328081461Escherichia coli E24377A, complete genomeputative phage integrase family protein5e-41166
NC_013961:851044:856197856197857129933Erwinia amylovora, complete genomehypothetical protein4e-39159
NC_004547:1174650:1180862118086211823311470Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase1e-25115
NC_014562:2563466:2598166259816625996351470Pantoea vagans C9-1 chromosome, complete genomePutative integrase/recombinase3e-24110
NC_012880:3421500:3444978344497834464411464Dickeya dadantii Ech703, complete genomeintegrase family protein8e-24108