Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3109643 Shigella flexneri 2a str. 301, complete genome

Start: 3109643, End: 3111814, Length: 2172

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:3147238314723831494092172Shigella flexneri 2002017 chromosome, complete genomeMalate synthase G01439
NC_004741:3041294:3098306309830631004772172Shigella flexneri 2a str. 2457T, complete genomemalate synthase01439
NC_004431:3513147:3536293353629335384642172Escherichia coli CFT073, complete genomemalate synthase01421
NC_013353:3669500:3726103372610337282742172Escherichia coli O103:H2 str. 12009, complete genomemalate synthase G01418
AP010958:3669500:3726103372610337282742172Escherichia coli O103:H2 str. 12009 DNA, complete genomemalate synthase G01418
NC_012560:4350465:4369897436989743720742178Azotobacter vinelandii DJ, complete genomemalate synthase G0935
NC_021150:4350461:4369893436989343720702178Azotobacter vinelandii CA6, complete genomemalate synthase G0935
NC_010676:2658495:2658495265849526606692175Burkholderia phytofirmans PsJN chromosome 2, complete sequencemalate synthase G0919
NC_015733:3736104:3788109378810937902862178Pseudomonas putida S16 chromosome, complete genomemalate synthase G0917
NC_007963:3500468:3518134351813435203622229Chromohalobacter salexigens DSM 3043, complete genomeMalate synthase G0912
NC_008752:415599:4380824380824403822301Acidovorax avenae subsp. citrulli AAC00-1, complete genomemalate synthase G0903
NC_010524:4644587:4666887466688746690912205Leptothrix cholodnii SP-6, complete genomemalate synthase G0869
NC_010167:1085106:1105149110514911073352187Brucella suis ATCC 23445 chromosome II, complete sequencemalate synthase G0836
NC_004310:1578918:1597154159715415993402187Brucella suis 1330 chromosome I, complete sequencemalate synthase0834
NC_007618:1593886:1612126161212616143122187Brucella melitensis biovar Abortus 2308 chromosome I, completeMalate synthase:ATP/GTP-binding site motif A (P-loop):Malate synthase G0833
NC_010742:1595065:1613303161330316154892187Brucella abortus S19 chromosome 1, complete sequenceMalate synthase0833
NC_006932:1596732:1614970161497016171562187Brucella abortus biovar 1 str. 9-941 chromosome I, completemalate synthase0833
NC_010103:1577750:1595987159598715981732187Brucella canis ATCC 23365 chromosome I, complete sequencemalate synthase G0832
NC_011894:200928:2009282009282031262199Methylobacterium nodulans ORS 2060, complete genomemalate synthase G0795
NC_010545:236000:2415982415982438322235Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein0783
NC_010545:236000:2486112486112508272217Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein0769
NC_017192:1063955:1072432107243210746152184Arcobacter sp. L, complete genomemalate synthase0763
NC_015857:1609670:1627907162790716300932187Brucella pinnipedialis B2/94 chromosome chromosome 1, complete1e-1688.6
NC_009901:2427291:242897624289762429491516Shewanella pealeana ATCC 700345, complete genomemalate synthase1e-1275.5
NC_016628:763833:794162794162794740579Vibrio furnissii NCTC 11218 chromosome 2, complete sequencemalate synthase1e-0862.4
NC_009376:420000:4346124346124370532442Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomemalate synthase4e-0757.4