Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3075783 Shigella flexneri 2a str. 301, complete genome

Start: 3075783, End: 3076208, Length: 426

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:311557831155783116003426Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-80297
NC_013941:3676146:370469237046923705117426Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-80297
NC_013353:3627355:365647036564703656895426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-80297
NC_004741:3041294:306796230679623068387426Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-80297
AP010958:3627355:365647036564703656895426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-80297
NC_004431:279868:286738286738287163426Escherichia coli CFT073, complete genomehypothetical protein7e-78288
NC_008253:3122148:315612031561203156545426Escherichia coli 536, complete genomehypothetical protein8e-78288
NC_009800:349592:354549354549354974426Escherichia coli HS, complete genomehypothetical protein3e-75280
NC_014618:4114004:413570341357034136107405Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein1e-1168.6
NC_013353:2455052:247087924708792471286408Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein6e-1166.2
AP010958:2455052:247087924708792471286408Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein6e-1166.2
CP002797:2062006:208130420813042081714411Escherichia coli NA114, complete genomehypothetical protein7e-1165.9
NC_004431:3409389:348354434835443483738195Escherichia coli CFT073, complete genomehypothetical protein1e-0755.1
NC_015663:549425:571278571278571706429Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein1e-0652