Pre_GI: BLASTP Hits

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Query: NC_004129:5723787:5725718 Pseudomonas fluorescens Pf-5, complete genome

Start: 5725718, End: 5726056, Length: 339

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:1182765:120565312056531205988336Pseudomonas fluorescens F113 chromosome, complete genomeprotein YajC8e-42168
NC_012660:5571500:557443855744385574776339Pseudomonas fluorescens SBW25 chromosome, complete genomepreprotein translocase subunit YajC1e-41168
NC_007492:5214709:521915552191555219490336Pseudomonas fluorescens PfO-1, complete genomeYajC1e-41167
NC_015379:1151143:117603611760361176374339Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative Sec protein secretion system, subunit yajC3e-41167
NC_010501:4787963:478796347879634788298336Pseudomonas putida W619, complete genomepreprotein translocase, YajC subunit8e-41165
NC_020829:4246847:424877442487744249115342Pseudomonas denitrificans ATCC 13867, complete genomepreprotein translocase subunit YajC7e-33139
NC_008789:1837493:185420518542051854549345Halorhodospira halophila SL1, complete genomepreprotein translocase, YajC subunit1e-2098.2
NC_018012:3401854:341959834195983419933336Thiocystis violascens DSM 198 chromosome, complete genomeprotein translocase subunit yajC2e-2097.8
NC_020299:127480:129407129407129760354Candidatus Kinetoplastibacterium oncopeltii TCC290E, completepreprotein translocase subunit YajC4e-1890.1
NC_007508:3034718:305116830511683051521354Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomepreprotein translocase subunit YajC5e-1889.7
NC_008601:1151653:115803511580351158391357Francisella tularensis subsp. novicida U112, complete genomepreprotein translocase family protein8e-1889
NC_017271:2789667:280745028074502807803354Xanthomonas campestris pv. raphani 756C chromosome, completepreprotein translocase subunit YajC2e-1787.8
NC_008610:1068429:107417410741741074515342Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),preprotein translocase, YajC subunit1e-1684.7
NC_018697:1343756:134657613465761346935360Cycloclasticus sp. P1 chromosome, complete genomePreprotein translocase subunit YajC2e-1684.7
NC_015581:1133775:113681711368171137251435Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomepreprotein translocase subunit YajC9e-1682
NC_009465:938378:941152941152941493342Candidatus Vesicomyosocius okutanii HA, complete genomepreprotein translocase YajC subunit3e-1580.1
NC_008789:1837493:185456718545671854938372Halorhodospira halophila SL1, complete genomepreprotein translocase, YajC subunit7e-1372.4
NC_010830:475248:488355488355488681327Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein6e-1166.2
NC_010382:3783879:380793838079383808201264Lysinibacillus sphaericus C3-41, complete genomehypothetical protein2e-1064.7
NC_014355:3248386:325425432542543254574321Candidatus Nitrospira defluvii, complete genomepreprotein translocase subunit YajC3e-1063.9
NC_015949:2101302:212248221224822122847366Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomepreprotein translocase subunit YajC4e-1063.5
NC_014720:2420455:245389424538942454259366Caldicellulosiruptor kronotskyensis 2002 chromosome, completepreprotein translocase, yajc subunit4e-1063.5
NC_014721:373607:376149376149376514366Caldicellulosiruptor kristjanssonii 177R1B chromosome, completepreprotein translocase, yajc subunit4e-1063.5
NC_014392:412916:418889418889419254366Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomepreprotein translocase, YajC subunit3e-1063.5
NC_012034:438000:443657443657444022366Anaerocellum thermophilum DSM 6725, complete genomepreprotein translocase, YajC subunit3e-1063.5
NC_017192:497950:516031516031516306276Arcobacter sp. L, complete genomepreprotein translocase subunit8e-1062.4
NC_014657:291567:293832293832294200369Caldicellulosiruptor owensensis OL chromosome, complete genomepreprotein translocase, yajc subunit1e-0961.6
NC_016940:3696570:371788237178823718226345Saprospira grandis str. Lewin chromosome, complete genomepreprotein translocase subunit YajC4e-0960.5
NC_010571:4483500:450793945079394508283345Opitutus terrae PB90-1, complete genomepreprotein translocase, YajC subunit7e-0959.3
NC_008686:1383891:138557213855721385904333Paracoccus denitrificans PD1222 chromosome 1, complete sequencepreprotein translocase, YajC subunit1e-0858.9
NC_007614:2764848:276676227667622766947186Nitrosospira multiformis ATCC 25196 chromosome 1, completepreprotein translocase YajC subunit1e-0858.9
NC_011059:2272747:229226322922632292616354Prosthecochloris aestuarii DSM 271, complete genomepreprotein translocase, YajC subunit1e-0858.5
NC_015391:695350:715051715051715356306Carnobacterium sp. 17-4 chromosome, complete genomepreprotein translocase subunit YajC3e-0857
NC_011565:190406:203423203423203761339Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,preprotein translocase YajC subunit4e-0856.6
NC_006156:685344:692416692416692730315Borrelia garinii PBi chromosome linear, complete sequencehypothetical protein1e-0755.5
NC_017515:1653306:165537116553711655637267Neisseria meningitidis M04-240196 chromosome, complete genomepreprotein translocase subunit YajC1e-0755.5
NC_014328:3682000:369182336918233692149327Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein2e-0754.7
NC_015500:987641:101288910128891013293405Treponema brennaborense DSM 12168 chromosome, complete genomepreprotein translocase, YajC subunit2e-0754.3
NC_011725:4373721:439584743958474396107261Bacillus cereus B4264 chromosome, complete genomepreprotein translocase subunit YajC9e-0752.4
NC_007798:260324:263902263902264204303Neorickettsia sennetsu str. Miyayama, complete genomepreprotein translocase, YajC subunit4e-0650.1