Pre_GI: BLASTP Hits

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Query: NC_004129:4368356:4377096 Pseudomonas fluorescens Pf-5, complete genome

Start: 4377096, End: 4378115, Length: 1020

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007712:1219957:123035312303531231102750Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein5e-52204
NC_007712:1516589:152579515257951526622828Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein4e-34145
NC_020181:5217000:524191952419195242773855Enterobacter aerogenes EA1509E, complete genomeCOG3617: Prophage antirepressor8e-30131
NC_005966:2110549:212319821231982123923726Acinetobacter sp. ADP1, complete genomeputative DNA-binding protein (Roi)2e-24113
NC_013361:1558423:157703215770321577754723Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding protein3e-22106
NC_011770:860944:874209874209874973765Pseudomonas aeruginosa LESB58, complete genomeputative phage-related protein5e-22105
NC_015566:3659318:366059336605933661267675Serratia sp. AS12 chromosome, complete genomePhage regulatory protein, Rha-like protein2e-1997.1
NC_011601:1039500:105684210568421057564723Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-binding protein4e-1995.5
NC_016845:2274500:228340522834052284115711Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,DNA-binding protein Roi5e-1995.5
NC_008258:269806:293814293814294536723Shigella flexneri 5 str. 8401, complete genomeputative DNA-binding protein Roi of bacteriophage BP-933W6e-1995.1
NC_011415:2153243:215947421594742160181708Escherichia coli SE11 chromosome, complete genomehypothetical protein6e-1995.1
NC_009778:959982:982338982338983075738Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-1892.8
NC_013282:1804909:182067518206751821400726Cronobacter turicensis, complete genomehypothetical protein4e-1892.4
NC_007712:3382000:339622233962223396974753Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-1790.9
NC_013364:1183000:120081812008181201540723Escherichia coli O111:H- str. 11128, complete genomeputative DNA-binding protein1e-1790.9
NC_002655:1332961:134955513495551350283729Escherichia coli O157:H7 EDL933, complete genomeputative DNA-binding protein Roi of bacteriophage BP-933W1e-1790.9
NC_017047:1906000:191134119113411912000660Rahnella aquatilis HX2 chromosome, complete genomephage antirepressor protein3e-1789.7
NC_017328:303987:322722322722323444723Shigella flexneri 2002017 chromosome, complete genomeDNA-binding protein Roi1e-1584.3
NC_010002:3509506:353682335368233537536714Delftia acidovorans SPH-1, complete genomehypothetical protein3e-1066.2
NC_009937:958576:972170972170972916747Azorhizobium caulinodans ORS 571, complete genomeputative antirepressor protein1e-0861.2
NC_013446:3034486:304048930404893041223735Comamonas testosteroni CNB-2, complete genomepossible bacteriophage antirepressor3e-0859.7