Pre_GI: BLASTP Hits

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Query: NC_003888:8569962:8580056 Streptomyces coelicolor A3(2), complete genome

Start: 8580056, End: 8581234, Length: 1179

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018750:3661243:3676167367616736773661200Streptomyces venezuelae ATCC 10712, complete genomeSerine phosphatase RsbU, regulator of sigma subunit8e-32138
NC_021177:7870464:7891941789194178931131173Streptomyces fulvissimus DSM 40593, complete genomeProtein serine/threonine phosphatase1e-31137
NC_003155:365500:3792203792203804581239Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase2e-31137
NC_009921:6483660:6510476651047665117141239Frankia sp. EAN1pec, complete genomeprotein serine/threonine phosphatase2e-28127
NC_017955:3670670:3687246368724636883611116Modestobacter marinus, complete genomeSerine phosphatase RsbU, regulator of sigma subunit3e-25116
NC_013510:4960500:4961196496119649624131218Thermomonospora curvata DSM 43183, complete genomeprotein serine/threonine phosphatase2e-20100
NC_009664:10718:2753127531288021272Kineococcus radiotolerans SRS30216, complete genomeStage II sporulation E family protein9e-1478.2
NC_017059:2771085:2818972281897228212362265Rhodospirillum photometricum DSM 122, complete genomeSerine phosphatase RsbU regulator sigma subunit6e-1168.9
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit7e-1065.5
NC_008009:2430509:2437727243772724387521026Acidobacteria bacterium Ellin345, complete genomeserine phosphatase9e-1065.1
NC_006576:1743500:1760393176039317617811389Synechococcus elongatus PCC 6301, complete genomehypothetical protein6e-0962.4
NC_007604:2555000:2555003255500325563911389Synechococcus elongatus PCC 7942, complete genomeserine phosphatase6e-0962.4
NC_010337:2339056:2351249235124923524331185Heliobacterium modesticaldum Ice1, complete genomeresponse regulator receiver modulated serine phosphatase8e-0962
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein2e-0860.5
NC_008011:1394777:1409027140902714110302004Lawsonia intracellularis PHE/MN1-00, complete genomeputative regulator3e-0860.1
NC_009664:10718:186341863419341708Kineococcus radiotolerans SRS30216, complete genome1e-0654.7
NC_012483:3144689:3149285314928531508861602Acidobacterium capsulatum ATCC 51196, complete genomeGAF/FHA/SpoE domain protein1e-0654.7
NC_006138:1571878:1571878157187815739772100Desulfotalea psychrophila LSv54, complete genomesimilar to ICFG protein4e-0652.8