Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:3138905:3153870 Streptomyces coelicolor A3(2), complete genome

Start: 3153870, End: 3154226, Length: 357

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:2640500:265274026527402653078339Streptomyces sp. SirexAA-E chromosome, complete genomeChaperonin Cpn108e-51198
NC_010572:5445081:545349054534905453864375Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative GroES-family molecular chaperone1e-50198
NC_016114:4614924:462304546230454623380336Streptomyces flavogriseus ATCC 33331 chromosome, complete genomechaperonin Cpn101e-50197
NC_016582:8031000:803717580371758037516342Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative 10kD chaperone subunit2e-48190
NC_017249:7993713:805651480565148056828315Bradyrhizobium japonicum USDA 6, complete genomeGroES3 chaperonin2e-0754.3
NC_013209:1925341:192948619294861929857372Acetobacter pasteurianus IFO 3283-01, complete genomeheat shock protein GroES3e-0753.9
NC_017100:1929672:193047319304731930844372Acetobacter pasteurianus IFO 3283-03, complete genomeheat shock protein GroES3e-0753.9
NC_017108:1925323:192946819294681929839372Acetobacter pasteurianus IFO 3283-12, complete genomeheat shock protein GroES3e-0753.9
NC_017111:1925311:192945619294561929827372Acetobacter pasteurianus IFO 3283-32, complete genomeheat shock protein GroES3e-0753.9
NC_017121:1925323:192946819294681929839372Acetobacter pasteurianus IFO 3283-07, complete genomeheat shock protein GroES3e-0753.9
NC_017125:1929666:193046719304671930838372Acetobacter pasteurianus IFO 3283-22, complete genomeheat shock protein GroES3e-0753.9
NC_017146:1929678:193047919304791930850372Acetobacter pasteurianus IFO 3283-26, complete genomeheat shock protein GroES3e-0753.9
NC_017150:1833087:183723218372321837603372Acetobacter pasteurianus IFO 3283-01-42C, complete genomeheat shock protein GroES3e-0753.9
NC_010172:798923:806340806340806627288Methylobacterium extorquens PA1, complete genomechaperonin Cpn104e-0753.5
NC_017249:3229500:325168032516803252081402Bradyrhizobium japonicum USDA 6, complete genome10 KD chaperonin7e-0752.8
NC_007798:547800:563368563368563664297Neorickettsia sennetsu str. Miyayama, complete genome10 kDa chaperonin9e-0752.4
NC_013009:562470:578087578087578383297Neorickettsia risticii str. Illinois, complete genomechaperonin GroS9e-0752.4
NC_004463:2158116:222268322226832222997315Bradyrhizobium japonicum USDA 110, complete genomeco-chaperonin GroES1e-0652
NC_019973:6028795:604373360437336044125393Mesorhizobium australicum WSM2073, complete genomeCo-chaperonin GroES2e-0651.2
NC_015675:6651899:666944466694446669836393Mesorhizobium opportunistum WSM2075 chromosome, complete genomeChaperonin Cpn102e-0651.2
NC_010475:2537500:255481225548122555123312Synechococcus sp. PCC 7002, complete genomechaperonin, 10 kDa protein2e-0651.2
NC_014932:1232346:128300612830061283302297Bartonella clarridgeiae 73, complete genomechaperonin, 10 kDa2e-0650.8
NC_010511:6067000:612231261223126122599288Methylobacterium sp. 4-46 chromosome, complete genomechaperonin Cpn103e-0650.4
NC_007722:851129:859176859176859490315Erythrobacter litoralis HTCC2594, complete genomeheat shock protein groES3e-0650.4
NC_011565:385454:396513396513396788276Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,co-chaperonin GroES5e-0649.7