Pre_GI Gene

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Host: NC_010572 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010572:5445081 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
544508154463401260putative phosphotransferase system IIC componentQuickGO ontologyBLASTP
54465605446793234putative phosphotransferase system IIB componentQuickGO ontologyBLASTP
54470095447746738putative ribonuclease PHQuickGO ontologyBLASTP
54478705448259390putative secreted proteinQuickGO ontologyBLASTP
54484135449015603hypothetical proteinBLASTP
54491605449993834hypothetical proteinBLASTP
54499905450625636hypothetical proteinBLASTP
545080054522961497putative osmoprotectant transporterQuickGO ontologyBLASTP
54524755452942468hypothetical proteinBLASTP
54531515453402252hypothetical proteinBLASTP
54534905453864375putative GroES-family molecular chaperoneQuickGO ontologyBLASTP
545395354563102358putative penicillin-binding proteinQuickGO ontologyBLASTP
54564605457308849hypothetical proteinBLASTP
54573015458188888putative integral membrane transport proteinQuickGO ontologyBLASTP
545827354593551083putative ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
54594405460174735hypothetical proteinBLASTP
546033054616161287putative secreted proteinQuickGO ontologyBLASTP
546167554631411467hypothetical proteinBLASTP
54632005463520321hypothetical proteinBLASTP
54636225464518897putative hydrolaseQuickGO ontologyBLASTP
54645845465192609hypothetical protein
54652915466085795hypothetical proteinBLASTP
54662985467122825hypothetical proteinBLASTP
546753154686191089putative phosphotransferaseQuickGO ontologyBLASTP
54686165469257642hypothetical proteinBLASTP
546948454709171434hypothetical proteinBLASTP
54707475471679933hypothetical proteinBLASTP
54724055472974570hypothetical proteinBLASTP
54730005473845846putative DNA-binding proteinQuickGO ontologyBLASTP
54737455474428684hypothetical proteinBLASTP
54746655474991327hypothetical proteinBLASTP
547500054767601761hypothetical proteinBLASTP
547684154800653225putative DNA helicaseQuickGO ontologyBLASTP
548006254819871926putative DNA helicaseQuickGO ontologyBLASTP
548197254867414770hypothetical proteinBLASTP