Pre_GI: BLASTP Hits

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Query: NC_003308:1:8752 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 8752, End: 9696, Length: 945

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:421554215543099945Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehypothetical protein0653
NC_003065:27163:395423954240273732Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencebeta-glucosidase3e-1066.2
NC_003308:1:613961396870732Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceC' protein3e-1066.2
NC_011982:130199:137201137201137929729Agrobacterium vitis S4 plasmid pTiS4, complete sequenceT-DNA oncoprotein2e-0963.2
NC_003308:1:757875788273696Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceD protein1e-0861.2
NC_003065:27163:409814098141676696Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehypothetical protein1e-0861.2
NC_003065:27163:357923579236475684Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehypothetical protein7e-0858.2
NC_003308:1:238923893072684Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence5 protein7e-0858.2
NC_003065:27163:468644686447529666Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceindole-3-lactate synthase3e-0756.2