Pre_GI Gene

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Host: NC_011982 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011982:130199 Agrobacterium vitis S4 plasmid pTiS4, complete sequence

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1301991315301332MmgEPrpD family proteinQuickGO ontologyBLASTP
1318251328741050alcohol dehydrogenaseQuickGO ontologyBLASTP
1329111344641554aldehyde dehydrogenaseQuickGO ontologyBLASTP
137201137929729T-DNA oncoproteinQuickGO ontologyBLASTP
1382201393561137D-nopaline dehydrogenaseQuickGO ontologyBLASTP
1417321429431212replication protein AQuickGO ontologyBLASTP
1429401439771038replication protein BQuickGO ontologyBLASTP
1442221454841263replication protein CQuickGO ontologyBLASTP
1454811465811101transposaseQuickGO ontologyBLASTP
14660914670294ctRNA_pT181QuickGO ontology
1482051506732469virAG regulated proteinQuickGO ontologyBLASTP