Pre_GI: BLASTN Hits

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Query: NC_013199:2058857 Lactobacillus rhamnosus Lc 705, complete genome

Start: 2058857, End: 2090316, Length: 31460

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013198:2088780*2088780211935230573Lactobacillus rhamnosus GG, complete genome016800BLASTN svgBLASTP svg
NC_014334:19543331954333198420029868Lactobacillus casei str. Zhang chromosome, complete genome02248BLASTN svgBLASTP svg
NC_010999:21557142155714218202826315Lactobacillus casei, complete genome02159BLASTN svgBLASTP svg
NC_008526:19735001973500199344619947Lactobacillus casei ATCC 334, complete genome0755BLASTN svgBLASTP svg
NC_013199:23869242386924241111624193Lactobacillus rhamnosus Lc 705, complete genome1e-21113BLASTN svgBLASTP svg
NC_007929:16372611637261165608018820Lactobacillus salivarius subsp. salivarius UCC118, complete genome3e-19105BLASTN svgBLASTP svg
NC_010610:10750010750013485227353Lactobacillus fermentum IFO 3956, complete genome7e-1797.6BLASTN svgBLASTP svg
NC_007929:67810*678109245724648Lactobacillus salivarius subsp. salivarius UCC118, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_008022:771767*77176779439922633Streptococcus pyogenes MGAS10270, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_010999:1381497*1381497140718925693Lactobacillus casei, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_012984:10747211074721110359928879Lactobacillus plantarum JDM1, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_012984:30770043077004310149024487Lactobacillus plantarum JDM1, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_010999:1979989*1979989200135021362Lactobacillus casei, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_004369:37110937110940147530367Corynebacterium efficiens YS-314, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_009092:15995261599526164486445339Shewanella loihica PV-4, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_014334:10392481039248106254923302Lactobacillus casei str. Zhang chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013520:53380353380355342119619Veillonella parvula DSM 2008, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013198:51179551179553527023476Lactobacillus rhamnosus GG, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010999:2450974*2450974247597425001Lactobacillus casei, complete genome4e-0661.9BLASTN svgBLASTP svg