Query: NC_013198:1030970 Lactobacillus rhamnosus GG, complete genome
Start: 1030970, End: 1050370, Length: 19401
Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria
General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_013198:2088780* | 2088780 | 2119352 | 30573 | Lactobacillus rhamnosus GG, complete genome | 0 | 3130 | BLASTN svg | BLASTP svg |
| NC_013198:511795 | 511795 | 535270 | 23476 | Lactobacillus rhamnosus GG, complete genome | 0 | 3126 | BLASTN svg | BLASTP svg |
| NC_013198:394000* | 394000 | 467958 | 73959 | Lactobacillus rhamnosus GG, complete genome | 0 | 3019 | BLASTN svg | BLASTP svg |
| NC_013198:1538792* | 1538792 | 1574489 | 35698 | Lactobacillus rhamnosus GG, complete genome | 0 | 3019 | BLASTN svg | BLASTP svg |
| NC_010999:2059738 | 2059738 | 2082247 | 22510 | Lactobacillus casei, complete genome | 0 | 1606 | BLASTN svg | BLASTP svg |
| NC_010999:623489 | 623489 | 646097 | 22609 | Lactobacillus casei, complete genome | 0 | 1598 | BLASTN svg | BLASTP svg |
| NC_010610:1178430 | 1178430 | 1228977 | 50548 | Lactobacillus fermentum IFO 3956, complete genome | 0 | 1057 | BLASTN svg | BLASTP svg |
| NC_008497:1575884* | 1575884 | 1599460 | 23577 | Lactobacillus brevis ATCC 367, complete genome | 4e-94 | 353 | BLASTN svg | BLASTP svg |
| NC_008530:1454118* | 1454118 | 1489742 | 35625 | Lactobacillus gasseri ATCC 33323, complete genome | 8e-28 | 133 | BLASTN svg | BLASTP svg |
| NC_015975:923812 | 923812 | 946258 | 22447 | Lactobacillus ruminis ATCC 27782 chromosome, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
| NC_019896:3311000* | 3311000 | 3337794 | 26795 | Bacillus subtilis subsp. subtilis str. BSP1 chromosome, complete | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_009009:540992* | 540992 | 566954 | 25963 | Streptococcus sanguinis SK36, complete genome | 9e-09 | 69.9 | BLASTN svg | BLASTP svg |
| NC_006270:718169* | 718169 | 740613 | 22445 | Bacillus licheniformis ATCC 14580, complete genome | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_015634:2694706* | 2694706 | 2720775 | 26070 | Bacillus coagulans 2-6 chromosome, complete genome | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_006322:717953* | 717953 | 739241 | 21289 | Bacillus licheniformis ATCC 14580, complete genome | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_003198:378844 | 378844 | 402752 | 23909 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_011772:323050* | 323050 | 343875 | 20826 | Bacillus cereus G9842, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_020272:3245834* | 3245834 | 3269201 | 23368 | Bacillus amyloliquefaciens IT-45, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_014915:308056* | 308056 | 331625 | 23570 | Geobacillus sp. Y412MC52 chromosome, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
| NC_013411:1168049* | 1168049 | 1191618 | 23570 | Geobacillus sp. Y412MC61, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
| NC_013192:2381901* | 2381901 | 2405665 | 23765 | Leptotrichia buccalis DSM 1135, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
| NC_006510:310212* | 310212 | 354220 | 44009 | Geobacillus kaustophilus HTA426, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |