Pre_GI: BLASTN Hits

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Query: NC_013198:1030970 Lactobacillus rhamnosus GG, complete genome

Start: 1030970, End: 1050370, Length: 19401

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013198:2088780*2088780211935230573Lactobacillus rhamnosus GG, complete genome03130BLASTN svgBLASTP svg
NC_013198:51179551179553527023476Lactobacillus rhamnosus GG, complete genome03126BLASTN svgBLASTP svg
NC_013198:394000*39400046795873959Lactobacillus rhamnosus GG, complete genome03019BLASTN svgBLASTP svg
NC_013198:1538792*1538792157448935698Lactobacillus rhamnosus GG, complete genome03019BLASTN svgBLASTP svg
NC_010999:20597382059738208224722510Lactobacillus casei, complete genome01606BLASTN svgBLASTP svg
NC_010999:62348962348964609722609Lactobacillus casei, complete genome01598BLASTN svgBLASTP svg
NC_010610:11784301178430122897750548Lactobacillus fermentum IFO 3956, complete genome01057BLASTN svgBLASTP svg
NC_008497:1575884*1575884159946023577Lactobacillus brevis ATCC 367, complete genome4e-94353BLASTN svgBLASTP svg
NC_008530:1454118*1454118148974235625Lactobacillus gasseri ATCC 33323, complete genome8e-28133BLASTN svgBLASTP svg
NC_015975:92381292381294625822447Lactobacillus ruminis ATCC 27782 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_019896:3311000*3311000333779426795Bacillus subtilis subsp. subtilis str. BSP1 chromosome, complete2e-0971.9BLASTN svgBLASTP svg
NC_009009:540992*54099256695425963Streptococcus sanguinis SK36, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_006270:718169*71816974061322445Bacillus licheniformis ATCC 14580, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015634:2694706*2694706272077526070Bacillus coagulans 2-6 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_006322:717953*71795373924121289Bacillus licheniformis ATCC 14580, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_003198:37884437884440275223909Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-0765.9BLASTN svgBLASTP svg
NC_011772:323050*32305034387520826Bacillus cereus G9842, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_020272:3245834*3245834326920123368Bacillus amyloliquefaciens IT-45, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014915:308056*30805633162523570Geobacillus sp. Y412MC52 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_013411:1168049*1168049119161823570Geobacillus sp. Y412MC61, complete genome9e-0660BLASTN svgBLASTP svg
NC_013192:2381901*2381901240566523765Leptotrichia buccalis DSM 1135, complete genome9e-0660BLASTN svgBLASTP svg
NC_006510:310212*31021235422044009Geobacillus kaustophilus HTA426, complete genome9e-0660BLASTN svgBLASTP svg