Pre_GI: BLASTN Hits

Some Help

Query: NC_008593:1103293 Clostridium novyi NT, complete genome

Start: 1103293, End: 1124645, Length: 21353

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_020291:4903981*4903981494131537335Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome1e-119438BLASTN svgBLASTP svg
NC_010520:28609602860960288097120012Clostridium botulinum A3 str. Loch Maree, complete genome1e-109404BLASTN svgBLASTP svg
NC_010723:83387083387085686522996Clostridium botulinum E3 str. Alaska E43, complete genome6e-109402BLASTN svgBLASTP svg
NC_010674:85839785839787856720171Clostridium botulinum B str. Eklund 17B, complete genome4e-107396BLASTN svgBLASTP svg
NC_021182:2883716*2883716290856724852Clostridium pasteurianum BC1, complete genome7e-90339BLASTN svgBLASTP svg
NC_014328:1135854*1135854115915023297Clostridium ljungdahlii ATCC 49587 chromosome, complete genome2e-53218BLASTN svgBLASTP svg
NC_018664:16633241663324168566922346Clostridium acidurici 9a chromosome, complete genome3e-21111BLASTN svgBLASTP svg
NC_019978:62547662547664529019815Halobacteroides halobius DSM 5150, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_019908:982471*982471100686924399Brachyspira pilosicoli P43/6/78 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_018604:1045774*1045774106959923826Brachyspira pilosicoli WesB complete genome1e-0560BLASTN svgBLASTP svg
NC_014330:2268773*2268773229259923827Brachyspira pilosicoli 95/1000 chromosome, complete genome1e-0560BLASTN svgBLASTP svg