Query: NC_008526:1973500 Lactobacillus casei ATCC 334, complete genome
Start: 1973500, End: 1993446, Length: 19947
Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria
General Information: This strain was isolated from Emmental cheese. Starter culture for milk fermentation and flavor development of cheese. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_010999:2155714 | 2155714 | 2182028 | 26315 | Lactobacillus casei, complete genome | 0 | 4335 | BLASTN svg | BLASTP svg |
NC_008526:2373190 | 2373190 | 2396656 | 23467 | Lactobacillus casei ATCC 334, complete genome | 0 | 2298 | BLASTN svg | BLASTP svg |
NC_013198:394000* | 394000 | 467958 | 73959 | Lactobacillus rhamnosus GG, complete genome | 0 | 2282 | BLASTN svg | BLASTP svg |
NC_010610:755000* | 755000 | 785599 | 30600 | Lactobacillus fermentum IFO 3956, complete genome | 0 | 2264 | BLASTN svg | BLASTP svg |
NC_008526:74500* | 74500 | 116504 | 42005 | Lactobacillus casei ATCC 334, complete genome | 0 | 2252 | BLASTN svg | BLASTP svg |
NC_008526:506263 | 506263 | 528187 | 21925 | Lactobacillus casei ATCC 334, complete genome | 0 | 2246 | BLASTN svg | BLASTP svg |
NC_008526:565902 | 565902 | 590932 | 25031 | Lactobacillus casei ATCC 334, complete genome | 0 | 2087 | BLASTN svg | BLASTP svg |
NC_008526:343445 | 343445 | 367272 | 23828 | Lactobacillus casei ATCC 334, complete genome | 0 | 2068 | BLASTN svg | BLASTP svg |
NC_010999:1381497* | 1381497 | 1407189 | 25693 | Lactobacillus casei, complete genome | 0 | 2066 | BLASTN svg | BLASTP svg |
NC_010999:2059738 | 2059738 | 2082247 | 22510 | Lactobacillus casei, complete genome | 0 | 2062 | BLASTN svg | BLASTP svg |
NC_014334:589526 | 589526 | 612598 | 23073 | Lactobacillus casei str. Zhang chromosome, complete genome | 0 | 2060 | BLASTN svg | BLASTP svg |
NC_014334:493308 | 493308 | 514588 | 21281 | Lactobacillus casei str. Zhang chromosome, complete genome | 0 | 2060 | BLASTN svg | BLASTP svg |
NC_014334:369974 | 369974 | 393773 | 23800 | Lactobacillus casei str. Zhang chromosome, complete genome | 0 | 2060 | BLASTN svg | BLASTP svg |
NC_015428:21724 | 21724 | 40308 | 18585 | Lactobacillus buchneri NRRL B-30929 chromosome, complete genome | 0 | 2044 | BLASTN svg | BLASTP svg |
NC_010610:1765000 | 1765000 | 1793448 | 28449 | Lactobacillus fermentum IFO 3956, complete genome | 0 | 2028 | BLASTN svg | BLASTP svg |
NC_015602:1949610 | 1949610 | 1972099 | 22490 | Lactobacillus kefiranofaciens ZW3 chromosome, complete genome | 0 | 2018 | BLASTN svg | BLASTP svg |
NC_014334:1954333 | 1954333 | 1984200 | 29868 | Lactobacillus casei str. Zhang chromosome, complete genome | 0 | 1988 | BLASTN svg | BLASTP svg |
NC_008525:561000 | 561000 | 587099 | 26100 | Pediococcus pentosaceus ATCC 25745, complete genome | 0 | 1953 | BLASTN svg | BLASTP svg |
NC_008528:331260 | 331260 | 354633 | 23374 | Oenococcus oeni PSU-1, complete genome | 0 | 1935 | BLASTN svg | BLASTP svg |
NC_010610:1178430 | 1178430 | 1228977 | 50548 | Lactobacillus fermentum IFO 3956, complete genome | 0 | 926 | BLASTN svg | BLASTP svg |
NC_013199:2058857* | 2058857 | 2090316 | 31460 | Lactobacillus rhamnosus Lc 705, complete genome | 0 | 755 | BLASTN svg | BLASTP svg |
NC_013198:2088780* | 2088780 | 2119352 | 30573 | Lactobacillus rhamnosus GG, complete genome | 0 | 688 | BLASTN svg | BLASTP svg |
NC_018528:1932000 | 1932000 | 1970099 | 38100 | Lactobacillus helveticus R0052 chromosome, complete genome | 0 | 672 | BLASTN svg | BLASTP svg |
NC_014727:2036340 | 2036340 | 2054335 | 17996 | Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome, | 2e-114 | 420 | BLASTN svg | BLASTP svg |
NC_010610:107500 | 107500 | 134852 | 27353 | Lactobacillus fermentum IFO 3956, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_010999:623489 | 623489 | 646097 | 22609 | Lactobacillus casei, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_012984:1074721 | 1074721 | 1103599 | 28879 | Lactobacillus plantarum JDM1, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_015660:296488 | 296488 | 336731 | 40244 | Geobacillus thermoglucosidasius C56-YS93 chromosome, complete | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_018720:357716* | 357716 | 386867 | 29152 | Bifidobacterium asteroides PRL2011 chromosome, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_007929:1637261 | 1637261 | 1656080 | 18820 | Lactobacillus salivarius subsp. salivarius UCC118, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |