Pre_GI: BLASTN Hits

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Query: NC_008268:3418000 Rhodococcus sp. RHA1, complete genome

Start: 3418000, End: 3440599, Length: 22600

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008271:24837124837127209923729Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence6e-140505BLASTN svgBLASTP svg
NC_008268:75763657576365760084724483Rhodococcus sp. RHA1, complete genome6e-140505BLASTN svgBLASTP svg
NC_008271:14084614084616654625701Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence3e-80307BLASTN svgBLASTP svg
NC_008726:49476949476951509920331Mycobacterium vanbaalenii PYR-1, complete genome6e-72280BLASTN svgBLASTP svg
NC_014814:13240413240415486122458Mycobacterium sp. Spyr1 chromosome, complete genome9e-68266BLASTN svgBLASTP svg
NC_013235:13544431354443137485420412Nakamurella multipartita DSM 44233, complete genome3e-40174BLASTN svgBLASTP svg
NC_000962:34740003474000349418120182Mycobacterium tuberculosis H37Rv, complete genome6e-38167BLASTN svgBLASTP svg
NC_002945:34293153429315345013820824Mycobacterium bovis AF2122/97, complete genome6e-38167BLASTN svgBLASTP svg
NC_008769:34272543427254344807620823Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome6e-38167BLASTN svgBLASTP svg
NC_009525:34849243484924350559920676Mycobacterium tuberculosis H37Ra, complete genome6e-38167BLASTN svgBLASTP svg
NC_012207:34211443421144344072619583Mycobacterium bovis BCG str. Tokyo 172, complete genome6e-38167BLASTN svgBLASTP svg
NC_009565:34857723485772350477419003Mycobacterium tuberculosis F11, complete genome2e-35159BLASTN svgBLASTP svg
NC_002755:34655823465582349023924658Mycobacterium tuberculosis CDC1551, complete genome2e-35159BLASTN svgBLASTP svg
NC_012522:985679856712209923533Rhodococcus opacus B4, complete genome9e-31143BLASTN svgBLASTP svg
NC_012522:3867167*3867167389736130195Rhodococcus opacus B4, complete genome1e-29139BLASTN svgBLASTP svg
NC_013235:40455894045589406814822560Nakamurella multipartita DSM 44233, complete genome3e-27131BLASTN svgBLASTP svg
NC_008268:71806637180663722188141219Rhodococcus sp. RHA1, complete genome1e-26129BLASTN svgBLASTP svg
NC_015312:1191633*1191633121600524373Pseudonocardia dioxanivorans CB1190 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_015848:38512303851230387671725488Mycobacterium canettii CIPT 140010059, complete genome1e-26129BLASTN svgBLASTP svg
NC_013235:2257899*2257899229859940701Nakamurella multipartita DSM 44233, complete genome8e-25123BLASTN svgBLASTP svg
NC_015067:45962645962649282633201Bifidobacterium longum subsp. longum JCM 1217, complete genome1e-23119BLASTN svgBLASTP svg
NC_015052:47194447194450736635423Bifidobacterium longum subsp. infantis 157F, complete genome1e-23119BLASTN svgBLASTP svg
NC_015052:1569255*1569255159297923725Bifidobacterium longum subsp. infantis 157F, complete genome1e-23119BLASTN svgBLASTP svg
NC_010816:62184962184964504823200Bifidobacterium longum DJO10A, complete genome1e-23119BLASTN svgBLASTP svg
NC_015145:32364453236445327405637612Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome5e-23117BLASTN svgBLASTP svg
NC_013131:997692999769291000446227534Catenulispora acidiphila DSM 44928, complete genome8e-22113BLASTN svgBLASTP svg
NC_009142:40463764046376406758021205Saccharopolyspora erythraea NRRL 2338, complete genome3e-21111BLASTN svgBLASTP svg
NC_014830:12522491252249128855336305Intrasporangium calvum DSM 43043 chromosome, complete genome5e-20107BLASTN svgBLASTP svg
NC_013169:23514752351475238021528741Kytococcus sedentarius DSM 20547, complete genome2e-19105BLASTN svgBLASTP svg
NC_013169:1545890*1545890156556719678Kytococcus sedentarius DSM 20547, complete genome2e-19105BLASTN svgBLASTP svg
NC_009921:53315655331565535374522181Frankia sp. EAN1pec, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_019673:27333272733327275459921273Saccharothrix espanaensis DSM 44229 complete genome3e-1591.7BLASTN svgBLASTP svg
NC_014215:22955002295500232183626337Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,1e-1489.7BLASTN svgBLASTP svg
NC_010524:93319193319195763824448Leptothrix cholodnii SP-6, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010524:33023983302398332924326846Leptothrix cholodnii SP-6, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009921:32558333255833327496419132Frankia sp. EAN1pec, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008699:56500565008084424345Nocardioides sp. JS614, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008699:590000*59000061720127202Nocardioides sp. JS614, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_019902:831911*83191186394132031Thioalkalivibrio nitratireducens DSM 14787, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_013739:717352*71735274820730856Conexibacter woesei DSM 14684, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010617:26398526398528723123247Kocuria rhizophila DC2201, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_011886:20973492097349211562818280Arthrobacter chlorophenolicus A6, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015859:15364391536439156796931531Corynebacterium variabile DSM 44702 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015859:31265003126500314878722288Corynebacterium variabile DSM 44702 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015859:3177199*3177199321545938261Corynebacterium variabile DSM 44702 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015859:33464733346473337186825396Corynebacterium variabile DSM 44702 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009921:3551036*3551036362235971324Frankia sp. EAN1pec, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_013169:1845735*1845735186893023196Kytococcus sedentarius DSM 20547, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_018524:301992*30199232409922108Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014151:40213944021394406852347130Cellulomonas flavigena DSM 20109 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008726:61000061000062882018821Mycobacterium vanbaalenii PYR-1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014391:1812500*1812500186094748448Micromonospora aurantiaca ATCC 27029 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014391:4672105*4672105470459932495Micromonospora aurantiaca ATCC 27029 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014815:658893*65889368838329491Micromonospora sp. L5 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_019673:13847951384795141142926635Saccharothrix espanaensis DSM 44229 complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010002:39808323980832399913918308Delftia acidovorans SPH-1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013757:1888850*1888850193149042641Geodermatophilus obscurus DSM 43160, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013757:27068352706835275100644172Geodermatophilus obscurus DSM 43160, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013757:30121303012130303570423575Geodermatophilus obscurus DSM 43160, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013757:36897336897341230243330Geodermatophilus obscurus DSM 43160, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015312:61752*617528144419693Pseudonocardia dioxanivorans CB1190 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015312:63989316398931641727718347Pseudonocardia dioxanivorans CB1190 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009921:3384116*3384116340895324838Frankia sp. EAN1pec, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009921:1645380*1645380166750622127Frankia sp. EAN1pec, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008789:13935261393526142028526760Halorhodospira halophila SL1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010717:12950012950015009920600Xanthomonas oryzae pv. oryzae PXO99A, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013757:72998672998676859938614Geodermatophilus obscurus DSM 43160, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012522:32245263224526325956035035Rhodococcus opacus B4, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008095:67595006759500678099421495Myxococcus xanthus DK 1622, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006087:76508176508178509920019Leifsonia xyli subsp. xyli str. CTCB07, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006087:28490*284907567147182Leifsonia xyli subsp. xyli str. CTCB07, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006087:1483761*1483761150739223632Leifsonia xyli subsp. xyli str. CTCB07, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006087:14256821425682144554519864Leifsonia xyli subsp. xyli str. CTCB07, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015067:2282000*2282000230417622177Bifidobacterium longum subsp. longum JCM 1217, complete genome3e-0661.9BLASTN svgBLASTP svg